Hi Allie, This probably needs white matter edits but it's hard to tell from one slice. Please refer to our white matter edits wiki and toplogical defects wiki and see if it helps in fixing the errors in your datasets. Also it looks like part of the Cerebellum is stripped off. You might want to correct that as well.
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEdits https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect Sita. On Mon, 18 Apr 2011, Allie Rosen wrote: > Hi, > > Once processed, several of my subjects have had errors around the occipital > lobe. Attached is an example. I've already tried editing brainmask.mgz and > running recon-all, but as you can see, this didn't change the pial or wm > borders. What can I do to fix this? > > Thank you, > Allie Rosen, MSc Candidate > Graduate Student, Department of Neurosurgery > Toronto Western Hospital 14-327 > 399 Bathurst St. > University of Toronto > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
