Hello Freesurfers,

We are interested in comparing cortical thickness in 2 groups. Due to small 
sample size (and thus less power), we are swaying away from whole-brain vertex 
analyses.  Instead we would like to compare specific ROIs between two groups.  
We understand that we can get an estimate of average cortical thickness from 
each ROI. We fear that by comparing those estimates over a large ROI may cause 
it to be less sensitive in picking up a very small region of severe cortical 
thinning.

Therefore, our questions are as follows:

 1.  Can we perform vertex-by-vertex analyses between groups but not on 
whole-brain and only on the specific apriori ROIs?
 2.  If we can do vertex-by-vertex ROI analyses, is there a reasonable 
statistical method to correct for multiple comparisons?

Kindly advise!

Regards,
Manish Dalwani
Sr. PRA
Dept. of Psychiatry
University of Colorado Denver
Tel: 303-724-3185
Email: manish.dalw...@ucdenver.edu
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