Thanks Doug. After doing reg-feat2anat , I checked the registration and overlaid zstat file:
tksurfer subjectid rh inflated -overlay featdir/rendered_thresh_zstat1.nii.gz I have attached an image of tksurfer interface . I'm not quite sure about what blue and red clusters mean. They are suposed to be activations, but I'm not watching the same in FSL-view. Could you give me a hand please? Am I using the right stat file? Thanks in advance best regards. ---------- Forwarded message ---------- From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> Date: 2011/3/23 Subject: Re: [Freesurfer] [Fressurfer] fMRI and anatomical T1 To: leonardo kay <leonardo....@gmail.com> Cc: freesurfer@nmr.mgh.harvard.edu There is a tutorial on this on our wiki. Basically, you need to run reg-feat2anat to get a registration file, then run tksurfer passing it the registration file and the stat volume as the overlay. doug leonardo kay wrote: > Hi all > > Can anyone help me overlaying fMRI activations from fsl on a anatomical T1 > volume in freesurfer. > Is there any previous format conversion to do before? > > Thanks in advance > best regards, > > -- > Leo Kay. > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Leo Kay.
<<attachment: image.JPG>>
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
