Any suggestions?
Best, Lisa ______________________________ On Fri, Oct 8, 2010 at 11:14 AM, Lisa F. Akiyama <lris...@uw.edu> wrote: > Hi Doug, > > I have plenty of disk space available. > I am currently running freesurfer-Darwin-leopard-ppc-stable-pub-v5.0.0. > > > Best, > Lisa > > > > > > On Fri, Oct 8, 2010 at 11:10 AM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> Are you running out of disk space? What version of FS are you using? >> >> doug >> >> Lisa F. Akiyama wrote: >> >>> Hello, >>> >>> I am a Freesurfer newbie trying to use the mri_convert command to convert >>> IMA format files to either nii or nifti1 format files. >>> Whenever I run the command I get an error at the very end saying that it >>> failed to write (please see below for the exact output error that was >>> displayed). >>> Any help would be greatly appreciated. >>> Thank you in advance. >>> >>> >>> Best, >>> Lisa Akiyama >>> >>> >>> % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nii -o 393-2-4.nii >>> >>> mri_convert -i >>> /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nii -o >>> 393-2-4.nii >>> $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ >>> >>> reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... >>> >>> rows = 256 >>> >>> cols = 256 >>> >>> TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 >>> >>> i_ras = (-0, -1, -0) >>> >>> j_ras = (-0, 0, -1) >>> >>> k_ras = (-1, 0, 0) >>> >>> writing to 393-2-4.nii... >>> >>> niiWrite(): error opening file 393-2-4.nii >>> >>> ERROR: failure writing 393-2-4.nii as volume type 24 >>> >>> >>> >>> % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nifti1 -o 393-2-4 >>> >>> mri_convert -i >>> /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nifti1 -o >>> 393-2-4 >>> $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ >>> >>> reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... >>> >>> rows = 256 >>> >>> cols = 256 >>> >>> TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 >>> >>> i_ras = (-0, -1, -0) >>> >>> j_ras = (-0, 0, -1) >>> >>> k_ras = (-1, 0, 0) >>> >>> writing to 393-2-4... >>> >>> nifti1Write(): error opening file 393-2-4.hdr >>> >>> ERROR: failure writing 393-2-4 as volume type 20 >>> >>> >>> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > >
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