Are you running out of disk space? What version of FS are you using? doug
Lisa F. Akiyama wrote: > Hello, > > I am a Freesurfer newbie trying to use the mri_convert command to > convert IMA format files to either nii or nifti1 format files. > Whenever I run the command I get an error at the very > end saying that it failed to write (please see below for the exact output > error that was displayed). > Any help would be greatly appreciated. > Thank you in advance. > > > Best, > Lisa Akiyama > > > % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nii -o 393-2-4.nii > > mri_convert -i > /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nii -o > 393-2-4.nii > > $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ > > reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... > > rows = 256 > > cols = 256 > > TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 > > i_ras = (-0, -1, -0) > > j_ras = (-0, 0, -1) > > k_ras = (-1, 0, 0) > > writing to 393-2-4.nii... > > niiWrite(): error opening file 393-2-4.nii > > ERROR: failure writing 393-2-4.nii as volume type 24 > > > > % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nifti1 -o 393-2-4 > > mri_convert -i > /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nifti1 -o > 393-2-4 > > $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ > > reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... > > rows = 256 > > cols = 256 > > TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 > > i_ras = (-0, -1, -0) > > j_ras = (-0, 0, -1) > > k_ras = (-1, 0, 0) > > writing to 393-2-4... > > nifti1Write(): error opening file 393-2-4.hdr > > ERROR: failure writing 393-2-4 as volume type 20 > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.