Hi Doug, I have plenty of disk space available. I am currently running freesurfer-Darwin-leopard-ppc-stable-pub-v5.0.0.
Best, Lisa On Fri, Oct 8, 2010 at 11:10 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Are you running out of disk space? What version of FS are you using? > > doug > > Lisa F. Akiyama wrote: > >> Hello, >> >> I am a Freesurfer newbie trying to use the mri_convert command to convert >> IMA format files to either nii or nifti1 format files. >> Whenever I run the command I get an error at the very end saying that it >> failed to write (please see below for the exact output error that was >> displayed). >> Any help would be greatly appreciated. >> Thank you in advance. >> >> >> Best, >> Lisa Akiyama >> >> >> % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nii -o 393-2-4.nii >> >> mri_convert -i >> /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nii -o >> 393-2-4.nii >> $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ >> >> reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... >> >> rows = 256 >> >> cols = 256 >> >> TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 >> >> i_ras = (-0, -1, -0) >> >> j_ras = (-0, 0, -1) >> >> k_ras = (-1, 0, 0) >> >> writing to 393-2-4.nii... >> >> niiWrite(): error opening file 393-2-4.nii >> >> ERROR: failure writing 393-2-4.nii as volume type 24 >> >> >> >> % mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nifti1 -o 393-2-4 >> >> mri_convert -i >> /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nifti1 -o >> 393-2-4 >> $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ >> >> reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima... >> >> rows = 256 >> >> cols = 256 >> >> TR=11.40, TE=4.40, TI=300.00, flip angle=15.00 >> >> i_ras = (-0, -1, -0) >> >> j_ras = (-0, 0, -1) >> >> k_ras = (-1, 0, 0) >> >> writing to 393-2-4... >> >> nifti1Write(): error opening file 393-2-4.hdr >> >> ERROR: failure writing 393-2-4 as volume type 20 >> >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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