Hi Guang, Depending on what you do you can choose different routes. Note, for both of these you first need to run the new timepoint cross sectionally (step 1 in the description http://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing ): recon-all -all -s newtpid -i path/to/dicom
Here are the two options once the cross sectional results are there: 1. you have only very few timepoints in the base/template so far (2 or 3). In those cases I would recommend to rerun the base and rerun all the longitudinals with the new and more accurate base. The commands are on the Wiki and are the same as usual. 2. you have many time points in your base, the additional time point is not likely to change the base much. In that case you can simply 'patch' the base without reprocessing and only run a single longitudinal run. Let me know if you want to go route 2 because I am writing a script to patch the base (there are a few files that need to be added so that the longitudinal run will go through). If there is demand, I will put priority on this and make it available. Best, Martin On Thu, 2010-02-25 at 09:16 -0600, Guang Zeng wrote: > Hi, there, > > I need add some control points to the longitudinal results. > After adding control points, I need rerun it. which command should I > use? > > recon-all -s subj.long.baseid .... > or > recon-all -long subj baseid .... > > > Thanks! > Guang > > > ______________________________________________________________________ > Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up > now. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
