you'll then need to use that to mask the input volume to recover the true original 16 (or 12) bit resolution.
On Fri, 9 Oct 2009, Nick Schmansky wrote: > add -odt int to the mri_convert flag: > > mri_convert -odt int brainmask.mgz brainmask.nii > > which saves the output file in 'integer' data format. > > On Fri, 2009-10-09 at 18:16 +0200, Jose Luis Cantero Lorente wrote: >> Hi there, >> >> would it be feasible to save to .nii the skull stripped image obtained with >> Freesurfer but keeping the original image resolution? As it is, Freesurfer >> allows you this operation, but the resultant .nii image comes with a poor >> resolution (8-bits) which is useless for my purpose. >> >> Thanks in advance. >> >> Best, >> Jose >> --- >> Jose Luis Cantero, Ph.D. >> Laboratory of Functional Neuroscience >> Department of Physiology, Anatomy, and Cell Biology >> University Pablo de Olavide >> Ctra. de Utrera, Km.1 >> 41013 - Sevilla >> - Spain - >> >> Phone: +34 954 977433 >> Fax: +34 954 349151 >> Email: jlcan...@upo.es >> http://www.upo.es/neuroaging/es/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
