MNI152 --- Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla - Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcan...@upo.es http://www.upo.es/neuroaging/es/ ----- Mensaje original ----- De: Douglas N Greve <gr...@nmr.mgh.harvard.edu> Fecha: Viernes, Octubre 9, 2009 6:46 pm Asunto: Re: [Freesurfer] skull stripped image with the original resolution > which MNI? > > Jose Luis Cantero Lorente wrote: > > Thanks, Nick. > > > > In which coordinates system are these skull stripped imaged? Is > it possible to save to .nii these skull stripped images > transformed to MNI coordinates? > > > > Thanks again. > > > > Best, > > Jose > > > > --- > > Jose Luis Cantero, Ph.D. > > Laboratory of Functional Neuroscience > > Department of Physiology, Anatomy, and Cell Biology > > University Pablo de Olavide > > Ctra. de Utrera, Km.1 > > 41013 - Sevilla > > - Spain - > > > > Phone: +34 954 977433 > > Fax: +34 954 349151 > > Email: jlcan...@upo.es > > http://www.upo.es/neuroaging/es/ > > > > ----- Mensaje original ----- > > De: Nick Schmansky <ni...@nmr.mgh.harvard.edu> > > Fecha: Viernes, Octubre 9, 2009 6:26 pm > > Asunto: Re: [Freesurfer] skull stripped image with the original > resolution> > > > >> add -odt int to the mri_convert flag: > >> > >> mri_convert -odt int brainmask.mgz brainmask.nii > >> > >> which saves the output file in 'integer' data format. > >> > >> On Fri, 2009-10-09 at 18:16 +0200, Jose Luis Cantero Lorente wrote: > >> > >>> Hi there, > >>> > >>> would it be feasible to save to .nii the skull stripped image > >>> > >> obtained with Freesurfer but keeping the original image > >> resolution? As it is, Freesurfer allows you this operation, but > >> the resultant .nii image comes with a poor resolution (8-bits) > >> which is useless for my purpose. > >> > >>> Thanks in advance. > >>> > >>> Best, > >>> Jose > >>> --- > >>> Jose Luis Cantero, Ph.D. > >>> Laboratory of Functional Neuroscience > >>> Department of Physiology, Anatomy, and Cell Biology > >>> University Pablo de Olavide > >>> Ctra. de Utrera, Km.1 > >>> 41013 - Sevilla > >>> - Spain - > >>> > >>> Phone: +34 954 977433 > >>> Fax: +34 954 349151 > >>> Email: jlcan...@upo.es > >>> http://www.upo.es/neuroaging/es/ > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>> > >> > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
