Thanks, Nick. In which coordinates system are these skull stripped imaged? Is it possible to save to .nii these skull stripped images transformed to MNI coordinates?
Thanks again. Best, Jose --- Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla - Spain - Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcan...@upo.es http://www.upo.es/neuroaging/es/ ----- Mensaje original ----- De: Nick Schmansky <ni...@nmr.mgh.harvard.edu> Fecha: Viernes, Octubre 9, 2009 6:26 pm Asunto: Re: [Freesurfer] skull stripped image with the original resolution > add -odt int to the mri_convert flag: > > mri_convert -odt int brainmask.mgz brainmask.nii > > which saves the output file in 'integer' data format. > > On Fri, 2009-10-09 at 18:16 +0200, Jose Luis Cantero Lorente wrote: > > Hi there, > > > > would it be feasible to save to .nii the skull stripped image > obtained with Freesurfer but keeping the original image > resolution? As it is, Freesurfer allows you this operation, but > the resultant .nii image comes with a poor resolution (8-bits) > which is useless for my purpose. > > > > Thanks in advance. > > > > Best, > > Jose > > --- > > Jose Luis Cantero, Ph.D. > > Laboratory of Functional Neuroscience > > Department of Physiology, Anatomy, and Cell Biology > > University Pablo de Olavide > > Ctra. de Utrera, Km.1 > > 41013 - Sevilla > > - Spain - > > > > Phone: +34 954 977433 > > Fax: +34 954 349151 > > Email: jlcan...@upo.es > > http://www.upo.es/neuroaging/es/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
