I mean multiple subjects simultaneously on the same machine
On Mon, 3 Aug 2009, Nathan Dankner wrote:
Do you mean running multiple subjects simultaneously or more than one recon
on an individual subject? In either case, the answer is yes. I could try
running them individually to see if the problem persists.
On 8/3/09 3:42 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote:
yes, I just saw that. I thought it only happened when the machine ran out
of memory. Are you running more than 1 recon at a time?
On Mon, 3 Aug 2009,
Nathan Dankner wrote:
I have 4 gigs of ram on here. This is the response that I got from Nick
Schmansky:
This is a known and long-standing problem with mris_volmask. The fault
occurs deep within a library, VTK, of which we make use (null pointer in
vtkDataArrayTemplate<T>::GetTuple). We're trying to find a fix or
workaround to this really annoying problem.
The cheap workaround is to run the -cortribbon -autorecon3 stages, and
likely mris_volmask will succeed.
On 8/3/09 3:32 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote:
looks like it's failing in mris_volmask. How much RAM do you have on your
machine?
On Mon, 3 Aug 2009, Nathan Dankner wrote:
Hello all,
I¹ve recently been having issues with several scans exiting with errors
after autorecon2, and they have exclusively been segmentation faults. I¹m
running stable version 4.2 on a machine with plenty of memory. Any ideas
what the problem might be? I¹ve included the recon-all.log files for two
subjects who have had the problem. Thanks,
Nathan
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