Nathan, This is a known and long-standing problem with mris_volmask. The fault occurs deep within a library, VTK, of which we make use (null pointer in vtkDataArrayTemplate<T>::GetTuple). We're trying to find a fix or workaround to this really annoying problem.
The cheap workaround is to run the -cortribbon -autorecon3 stages, and likely mris_volmask will succeed. Nick On Mon, 2009-08-03 at 14:18 -0400, Nathan Dankner wrote: > Hello all, > > I’ve recently been having issues with several scans exiting with > errors after autorecon2, and they have exclusively been segmentation > faults. I’m running stable version 4.2 on a machine with plenty of > memory. Any ideas what the problem might be? I’ve included the > recon-all.log files for two subjects who have had the problem. > Thanks, > > Nathan > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
