Martin, One thing to try is to make sure that your volumes look ok. There is a tutorial here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData
You don't need to download the tutorial data to follow it, just substitute the subject 'bert' which is distributed in the freesurfer/subjects directory, as the example of good output. You can also send me the subject data in a tarball to this email drop: https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html Nick On Tue, 2008-06-10 at 15:42 +0200, Martin Kavec wrote: > On Monday 09 June 2008 21:57:36 Bruce Fischl wrote: > > I guess it's possible but the -make switch is designed to prevent this. Are > > the surfaces topologically incorrect? What is the euler number for them? > > Bruce, this depends on at which point the topology fixing was interrupted. > For > this thread I reported a case with 64 defects. I am running the recon-all > followed by LGI once again to see whether it will pass. I will make sure that > the fixer is not interrupted. I'll let you know. "-make" option may not > possibly handle interruption of the fixer correctly? > > Thanks, > > Martin > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
