Dear Bruce, dear Freesurfer users
Thanks a lot for the advice. But when using mri_concate in order to average
the volumes, there is the following error:
"Error: dimension mismatch" between the lh.volume files of the subjects.
We used following syntax:
[thickness, f] = read_curv('lh.thickness') ;
[area, f] = read_curv('lh.area') ;
volume = thickness .* area;
write_curv('lh.volume', volume, nfaces);
mri_concat --i Subjects_*_Kopie/surf/lh.volume --o average_lh_volume --mean
ERROR: dimension mismatch between Subjects_Control01_Kopie/surf/lh.volume
and Subjects_Control02_Kopie/surf/lh.volume
Thanks in advance
Best regards
Juergen
On 11.9.2007 23:24 Uhr, "Bruce Fischl" <[EMAIL PROTECTED]> wrote:
> read_curv will return that also:
>
> [thickness_vector, nfaces] = read_curv('lh.thickness') ;
>
> I'm a bit worried that you have a dimension mismatch. That shouldn't
> happen.
>
> Bruce
>
>
> On Tue, 11 Sep 2007, Juergen Haenggi,
> Psychological Institute wrote:
>
>> Dear Freesurfer users
>>
>> I computed ?.volume files by using several commands sent by Bruce. Instead of
>> using the save_mgh.m command, which not really worked because there was a
>> dimension mismatch later when using mri_concat, we used write_curv.m. I need
>> the number of faces in the surface to write ?h.volume files. Where can I get
>> these numbers? Is it the file called f created in the Matlab current
>> directory after running read_curv multiplying area times thickness, and
>> write_curv?
>>
>> Thanks in advance
>> Best regards
>> Juergen Haenggi
>>
>> -------------------------------------------------
>> Juergen Haenggi
>> Ph.D. (Dr. des.)
>> Division of Neuropsychology
>> Institute of Psychology
>> University of Zurich
>> Binzmuehlestrasse 14, PO Box 25
>> 8050 Zurich, Switzerland
>> 0041 44 635 73 97 (phone office)
>> 0041 76 445 86 84 (phone mobile)
>> 0041 44 635 74 09 (fax office)
>> BIN 4.D.04 (office room number)
>> [EMAIL PROTECTED] (email)
>> http://www.psychologie.uzh.ch/neuropsy/ (website)
>> http://www.juergenhaenggi.ch (private website)
>> -------------------------------------------------
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>>
>>
-----------------------------------------------------------
Juergen Haenggi
Ph.D. (Dr. des.)
Division of Neuropsychology
Institute of Psychology
University of Zurich
Binzmuehlestrasse 14, PO Box 25
8050 Zurich, Switzerland
0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number)
[EMAIL PROTECTED] (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)
-----------------------------------------------------------
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