look at the ?h.inflated.nofix to see what is causing the defect, and correct the wm.mgz manually to remove it. Jenni: can you point Derin at the appropriate wiki page?

thanks,
Bruce


On Fri, 13 Apr 2007, Derin Cobia wrote:

The ?h.orig.nofix looks ok, meaning it follows the white-gray boundary
appropriately.  What should I try next?

-Derin

this is probably a topology fixing problem. Look at the ?h.orig.nofix and
see how it is
On Fri, 13 Apr 2007, Derin Cobia wrote:

Did you mean wm.mgz?  It looks fine.  The orig surface is not good
either.
Here's a pic.

-Derin



Hi Derin,

What does the orig surface look like?  and the wm?  Are those correct?

Jenni

On Fri, 13 Apr 2007, Derin Cobia wrote:

I have two subjects where the white surface does not follow the
gray-white
gradient (see attached pic for example).  Is there any way to fix
this?
I'm assuming it has to do with the limitations of my scan too (it's
FLASH
data).  I'm running 3.0.4, thanks.

-Derin








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