Hi - I suspect that the simplest solution is to source the FreeSurfer
setup _before_ the FSl setup.
Cheers, Steve.
On 21 Mar 2006, at 16:36, Clifford A. Smith, PhD wrote:
I believe that I have read a post on this in the past, but I was
unable to run a search. I have FSL configured to startup in X11
without a problem. Also can run Freesurfer (source
SetupFreeSurfer.csh) without a problem. But FSL will not work
after I have ran the source SetUpFreeSurfer.csh command. The
following is the error output. Any work around besides run
separate X11 windows for FSL and Freesurfer?
[Clifford-Smiths-Computer:~] Cliff% source SetUpFreeSurfer.csh
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Users/Cliff/Imaging/freesurfer
FSFAST_HOME /Users/Cliff/Imaging/freesurfer/fsfast
SUBJECTS_DIR /Users/Cliff/Imaging/freesurfer/subjects
FUNCTIONALS_DIR /Users/Cliff/Imaging/freesurfer/sessions
MINC_BIN_DIR /Users/Cliff/Imaging/freesurfer/mni/bin
MINC_LIB_DIR /Users/Cliff/Imaging/freesurfer/mni/lib
PERL5LIB /Users/Cliff/Imaging/freesurfer/mni/lib/../System/
Library/Perl/5
.8.6
GSL_DIR /Users/Cliff/Imaging/freesurfer/lib/gsl
QTDIR /Users/Cliff/Imaging/freesurfer/lib/qt
TCLLIBPATH /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib
MISC_LIB /Users/Cliff/Imaging/freesurfer/lib/misc/lib
FSL_DIR /users/cliff/fsl
[Clifford-Smiths-Computer:~] Cliff% fsl
Error in startup script: no suitable image found. Did find:
/Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/
libtix8.1.8.4.a: unknown file type, first eight bytes: 0
x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
/Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/
libtix8.1.8.4.a: unknown file type, first eight bytes: 0
x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
while executing
"load /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/
libtix8.1.8.4.a Tix"
("package ifneeded" script)
invoked from within
"package require Tix"
invoked from within
"if { [ string first tclsh [ file tail [ info
nameofexecutable ] ] ] != 0 } {
package require Tix
tix configure -scheme TixGray
option add ..."
(file "/users/cliff/fsl/tcl/fslstart.tcl" line 3)
invoked from within
"source [ file dirname [ info script ] ]/fslstart.tcl"
(file "/users/cliff/fsl/tcl/fsl.tcl" line 71)
invoked from within
"source ${FSLDIR}/tcl/${origname}.tcl"
(file "/users/cliff/fsl/bin/fsl" line 19)
[Clifford-Smiths-Computer:~] Cliff%
------------------
Clifford Smith, PhD
Assistant Professor of Behavioral Sciences
Rush University Medical Center
312.942.2893
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Freesurfer@nmr.mgh.harvard.edu
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------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[EMAIL PROTECTED] http://www.fmrib.ox.ac.uk/~steve
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