Clifford,
After sourcing SetUpFreeSurfer.csh, but before starting FSL, type this:
unsetenv TCLLIBPATH
This should take care of the problem you are seeing. You may want to
include that line in your SetUpFreeSurfer.csh file.
Nick
On Tue, 2006-03-21 at 10:36 -0600, Clifford A. Smith, PhD wrote:
> I believe that I have read a post on this in the past, but I was
> unable to run a search. I have FSL configured to startup in X11
> without a problem. Also can run Freesurfer (source
> SetupFreeSurfer.csh) without a problem. But FSL will not work after I
> have ran the source SetUpFreeSurfer.csh command. The following is the
> error output. Any work around besides run separate X11 windows for
> FSL and Freesurfer?
>
>
> [Clifford-Smiths-Computer:~] Cliff% source SetUpFreeSurfer.csh
> Setting up environment for FreeSurfer/FS-FAST (and FSL)
> FREESURFER_HOME /Users/Cliff/Imaging/freesurfer
> FSFAST_HOME /Users/Cliff/Imaging/freesurfer/fsfast
> SUBJECTS_DIR /Users/Cliff/Imaging/freesurfer/subjects
> FUNCTIONALS_DIR /Users/Cliff/Imaging/freesurfer/sessions
> MINC_BIN_DIR /Users/Cliff/Imaging/freesurfer/mni/bin
> MINC_LIB_DIR /Users/Cliff/Imaging/freesurfer/mni/lib
> PERL5LIB
> /Users/Cliff/Imaging/freesurfer/mni/lib/../System/Library/Perl/5
> .8.6
> GSL_DIR /Users/Cliff/Imaging/freesurfer/lib/gsl
> QTDIR /Users/Cliff/Imaging/freesurfer/lib/qt
> TCLLIBPATH /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib
> MISC_LIB /Users/Cliff/Imaging/freesurfer/lib/misc/lib
> FSL_DIR /users/cliff/fsl
> [Clifford-Smiths-Computer:~] Cliff% fsl
> Error in startup script: no suitable image found. Did find:
> /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a:
> unknown file type, first eight bytes: 0
> x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
> /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a:
> unknown file type, first eight bytes: 0
> x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
> while executing
> "load /Users/Cliff/Imaging/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a Tix"
> ("package ifneeded" script)
> invoked from within
> "package require Tix"
> invoked from within
> "if { [ string first tclsh [ file tail [ info nameofexecutable ] ] ] !
> = 0 } {
> package require Tix
> tix configure -scheme TixGray
> option add ..."
> (file "/users/cliff/fsl/tcl/fslstart.tcl" line 3)
> invoked from within
> "source [ file dirname [ info script ] ]/fslstart.tcl"
> (file "/users/cliff/fsl/tcl/fsl.tcl" line 71)
> invoked from within
> "source ${FSLDIR}/tcl/${origname}.tcl"
> (file "/users/cliff/fsl/bin/fsl" line 19)
> [Clifford-Smiths-Computer:~] Cliff%
>
> ------------------
> Clifford Smith, PhD
> Assistant Professor of Behavioral Sciences
> Rush University Medical Center
> 312.942.2893
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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