On 06/28/2016 04:34 PM, Olivier Sallou wrote: > by the way, as they are all python packages, should we handle them in > DebianMed or Python team ? > > On 06/28/2016 03:20 PM, Steffen Möller wrote: >> This is great! That custom fokr of pysam reads as if one wants to avoid >> that and rather give those extra features back to everyone via upstream. >> >> I'll do bioblend and svgwrite - now. >> >> Anybody else chiming in? >> >> >> bx-python >> wchartype >> dictobj >> bioblend Steffen >> requests-toolbelt I talked too fast, requests-toolbelt is already packaged.... ( after having almost done the job... ). Will have a look at other packages... >> pulsar-galaxy-lib >> sqlalchemy-migrate >> svgwrite Steffen >> >> >> Steffen >> >> >> On 27/06/16 21:04, Michael Crusoe wrote: >>> Python packages that need packaging: >>> >>> bx-python >>> wchartype >>> dictobj >>> bioblend >>> requests-toolbelt >>> pulsar-galaxy-lib >>> sqlalchemy-migrate >>> svgwrite >>> >>> This should a complete list, Nate promises that there are no hidden >>> sub dependencies. >>> >>> They also use a custom fork of pysam >>> >>> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe >>> <michael.cru...@gmail.com <mailto:michael.cru...@gmail.com>> wrote: >>> >>> Hoopla, >>> >>> I'm at the Galaxy Community Conference sitting next to Nate Coraor. >>> >>> Nate is enthusiastic about Galaxy becoming properly packaged for >>> Debian. He is well aware of how hacky his current package is :-) >>> >>> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou >>> <olivier.sal...@irisa.fr <mailto:olivier.sal...@irisa.fr>> wrote: >>> >>> >>> >>> On 06/16/2016 08:43 AM, Michael Crusoe wrote: >>> > >>> > Vezi Tweetul lui @natefoo: >>> > https://twitter.com/natefoo/status/743306923026440194 >>> > >>> > https://depot.galaxyproject.org/nate/dpkg/ >>> > >>> nice, but easy for them. Galaxy installs many things at run >>> time from >>> remote locations (pypi and others). So not easy to fit in >>> Debian as all >>> dependencies not to be Debian packages. >>> >>> Olivier >>> >>> -- >>> Olivier Sallou >>> IRISA / University of Rennes 1 >>> Campus de Beaulieu, 35000 RENNES - FRANCE >>> Tel: 02.99.84.71.95 >>> >>> gpg key id: 4096R/326D8438 (keyring.debian.org >>> <http://keyring.debian.org>) >>> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB >>> 326D 8438 >>> >>> >>> >>> >>> -- >>> Michael R. Crusoe >>> Community Engineer & Co-founder >>> Common Workflow Language project >>> https://impactstory.org/u/0000-0002-2961-9670 >>> michael.cru...@gmail.com <mailto:michael.cru...@gmail.com> >>> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058> >>> +1 480 627 9108 <tel:%2B1%20480%20627%209108> >>> >>> >>> >>> >>> -- >>> Michael R. Crusoe >>> Community Engineer & Co-founder >>> Common Workflow Language project >>> https://impactstory.org/u/0000-0002-2961-9670 >>> michael.cru...@gmail.com <mailto:michael.cru...@gmail.com> >>> +32 (0) 2 808 25 58 >>> +1 480 627 9108
-- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
