by the way, as they are all python packages, should we handle them in DebianMed or Python team ?
On 06/28/2016 03:20 PM, Steffen Möller wrote: > This is great! That custom fokr of pysam reads as if one wants to avoid > that and rather give those extra features back to everyone via upstream. > > I'll do bioblend and svgwrite - now. > > Anybody else chiming in? > > > bx-python > wchartype > dictobj > bioblend Steffen > requests-toolbelt > pulsar-galaxy-lib > sqlalchemy-migrate > svgwrite Steffen > > > Steffen > > > On 27/06/16 21:04, Michael Crusoe wrote: >> Python packages that need packaging: >> >> bx-python >> wchartype >> dictobj >> bioblend >> requests-toolbelt >> pulsar-galaxy-lib >> sqlalchemy-migrate >> svgwrite >> >> This should a complete list, Nate promises that there are no hidden >> sub dependencies. >> >> They also use a custom fork of pysam >> >> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe >> <michael.cru...@gmail.com <mailto:michael.cru...@gmail.com>> wrote: >> >> Hoopla, >> >> I'm at the Galaxy Community Conference sitting next to Nate Coraor. >> >> Nate is enthusiastic about Galaxy becoming properly packaged for >> Debian. He is well aware of how hacky his current package is :-) >> >> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou >> <olivier.sal...@irisa.fr <mailto:olivier.sal...@irisa.fr>> wrote: >> >> >> >> On 06/16/2016 08:43 AM, Michael Crusoe wrote: >> > >> > Vezi Tweetul lui @natefoo: >> > https://twitter.com/natefoo/status/743306923026440194 >> > >> > https://depot.galaxyproject.org/nate/dpkg/ >> > >> nice, but easy for them. Galaxy installs many things at run >> time from >> remote locations (pypi and others). So not easy to fit in >> Debian as all >> dependencies not to be Debian packages. >> >> Olivier >> >> -- >> Olivier Sallou >> IRISA / University of Rennes 1 >> Campus de Beaulieu, 35000 RENNES - FRANCE >> Tel: 02.99.84.71.95 >> >> gpg key id: 4096R/326D8438 (keyring.debian.org >> <http://keyring.debian.org>) >> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB >> 326D 8438 >> >> >> >> >> -- >> Michael R. Crusoe >> Community Engineer & Co-founder >> Common Workflow Language project >> https://impactstory.org/u/0000-0002-2961-9670 >> michael.cru...@gmail.com <mailto:michael.cru...@gmail.com> >> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058> >> +1 480 627 9108 <tel:%2B1%20480%20627%209108> >> >> >> >> >> -- >> Michael R. Crusoe >> Community Engineer & Co-founder >> Common Workflow Language project >> https://impactstory.org/u/0000-0002-2961-9670 >> michael.cru...@gmail.com <mailto:michael.cru...@gmail.com> >> +32 (0) 2 808 25 58 >> +1 480 627 9108 -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
