----- Mail original ----- > De: "Michael Crusoe" <michael.cru...@gmail.com> > À: "Olivier Sallou" <olivier.sal...@irisa.fr> > Cc: "Debian Med Project List" <debian-med@lists.debian.org>, "Nate Coraor" > <n...@bx.psu.edu> > Envoyé: Lundi 27 Juin 2016 21:04:21 > Objet: Re: Galaxy project producing their own Debian packages
> Python packages that need packaging: > bx-python > wchartype > dictobj > bioblend > requests-toolbelt > pulsar-galaxy-lib > sqlalchemy-migrate > svgwrite you mean all other Galaxy dependencies are already available as packages and only those ones are missing in Debian ? an other point is Galaxy uses specific versions of packages (which is quite usual), but may not work with latest releases of those. Would need testing. We would need in Debian to deactivate Galaxy startup in virtualenv as well as skip any auto install. Olivier > This should a complete list, Nate promises that there are no hidden sub > dependencies. > They also use a custom fork of pysam > On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe < michael.cru...@gmail.com > > wrote: > > Hoopla, > > > I'm at the Galaxy Community Conference sitting next to Nate Coraor. > > > Nate is enthusiastic about Galaxy becoming properly packaged for Debian. He > > is well aware of how hacky his current package is :-) > > > On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou < olivier.sal...@irisa.fr > > > > > wrote: > > > > On 06/16/2016 08:43 AM, Michael Crusoe wrote: > > > > > > > > > > > > > > Vezi Tweetul lui @natefoo: > > > > > > > https://twitter.com/natefoo/status/743306923026440194 > > > > > > > > > > > > > > https://depot.galaxyproject.org/nate/dpkg/ > > > > > > > > > > > > > nice, but easy for them. Galaxy installs many things at run time from > > > > > > remote locations (pypi and others). So not easy to fit in Debian as all > > > > > > dependencies not to be Debian packages. > > > > > > Olivier > > > > > > -- > > > > > > Olivier Sallou > > > > > > IRISA / University of Rennes 1 > > > > > > Campus de Beaulieu, 35000 RENNES - FRANCE > > > > > > Tel: 02.99.84.71.95 > > > > > > gpg key id: 4096R/326D8438 ( keyring.debian.org ) > > > > > > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 > > > > > -- > > > Michael R. Crusoe > > > Community Engineer & Co-founder > > > Common Workflow Language project > > > https://impactstory.org/u/0000-0002-2961-9670 > > > michael.cru...@gmail.com > > > +32 (0) 2 808 25 58 > > > +1 480 627 9108 > > -- > Michael R. Crusoe > Community Engineer & Co-founder > Common Workflow Language project > https://impactstory.org/u/0000-0002-2961-9670 > michael.cru...@gmail.com > +32 (0) 2 808 25 58 > +1 480 627 9108
