The error is from here
In file included from ./boost/math/tools/mp.hpp:341,
from ./boost/math/policies/policy.hpp:11,
from ./boost/math/special_functions/math_fwd.hpp:31,
from ./boost/math/special_functions/airy.hpp:11,
from ./boost/math/special_functions.hpp:15,
from libs/math/build/../src/tr1/pch.hpp:9:
/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-11.2.0/gcc-12.2.0-lwc56owtziygs5xlu3yqpulfp6fvaulb/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/utility:94:14:
error: '__and_' was not declared in this scope; did you mean 'std::__and_'?
94 | noexcept(__and_<is_nothrow_move_constructible<_Tp>,
| ^~~~~~
| std::__and_
I don't see ./boost/math/tools/mp.hpp in version 1.82 of boost. Does that
one work?
Bruno
Le ven. 23 juin 2023 à 14:23, Andrew Li <a...@andrew.cmu.edu> a écrit :
> Hi Bruno,
>
> I've attached the output file spack generated with the original error
> message. I changed the c++ standard originally because I saw a similar
> problem on this link (https://github.com/spack/spack/issues/15869).
> Currently I'm trying various boost versions with dealii@9.2.0, as well as
> versions down to dealii@9.0.0. So far nothing has worked yet.
>
> Best,
> Andrew
>
> On Friday, June 23, 2023 at 1:01:17 PM UTC-4 Andrew Li wrote:
>
>> I assume the error has changed because spack automatically found the new
>> boost package which has been installed using cxxstd=11. In fact, specifying
>> the boost installation to cxxstd=17 again reproduces the original error
>> message. I'm rerunning that installation to get the build-log file now
>>
>>
>> On Friday, June 23, 2023 at 12:39:24 PM UTC-4 Andrew Li wrote:
>>
>>> Hi Bruno,
>>>
>>> Thanks for your quick response! The error message I get when i run
>>> [al5@coe ~]$ srun --mem-per-cpu=16G spack install dea...@9.2.0
>>> %g...@12.2.0
>>>
>>> is
>>>
>>> ==> Installing dealii-9.2.0-27ysq7kvk7cdu7t2a6jjqmls4qd5fsbc
>>> ==> No binary for dealii-9.2.0-27ysq7kvk7cdu7t2a6jjqmls4qd5fsbc found:
>>> installing from source
>>>
>>> 1 out of 1 hunk FAILED -- saving rejects to file
>>> cmake/modules/FindGINKGO.cmake.rej
>>> 1 out of 1 hunk FAILED -- saving rejects to file
>>> cmake/modules/FindGINKGO.cmake.rej
>>> ==> Using cached archive:
>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz
>>> ==> Using cached archive:
>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/c9/c9884ebb0fe379c539012a225d8bcdcfe288edec8dc9d319fbfd64d8fbafba8e
>>>
>>> ==> Patch
>>> https://github.com/dealii/dealii/commit/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1
>>> failed.
>>> ==> Error: ProcessError: Command exited with status 1:
>>> '/usr/bin/patch' '-s' '-p' '1' '-i'
>>> '/tmp/al5/spack-stage/spack-stage-fd9czbgb/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1'
>>> '-d' '.'
>>> srun: error: e001: task 0: Exited with exit code 1
>>>
>>> I have also tried specifying boost to bo...@1.72 and bo...@1.68. the
>>> error is the same as the one above.
>>>
>>> Best,
>>> Andrew
>>>
>>> On Friday, June 23, 2023 at 11:53:58 AM UTC-4 bruno.t...@gmail.com
>>> wrote:
>>>
>>>> Andrew,
>>>>
>>>> What's the error message that you get when using `spack install
>>>> dea...@9.2.0 %g...@12.2.0` ? spack writes the exact error in an output
>>>> file. I don't think changing the C++ standard is the right fix, instead I
>>>> would change the version of boost.
>>>>
>>>> Best,
>>>>
>>>> Bruno
>>>>
>>>> On Friday, June 23, 2023 at 10:15:08 AM UTC-4 a...@andrew.cmu.edu
>>>> wrote:
>>>>
>>>>> Dear all,
>>>>>
>>>>> I hope this is the right place to post this question. I am trying to
>>>>> install an older version of dealii on a centos7 cluster using spack, and
>>>>> am
>>>>> running into issues. I have no problem installing dea...@9.4.2, but
>>>>> am unable to install dea...@9.2.0.
>>>>>
>>>>> If I run without specifying boost cxxstd
>>>>>
>>>>> spack install dea...@9.2.0 %g...@12.2.0
>>>>>
>>>>> I get an error
>>>>>
>>>>> ==> boost: Executing phase: 'install'
>>>>> ==> Error: ProcessError: Command exited with status 1:
>>>>> './b2' 'install' 'threading=multi' '-j' '4'
>>>>> '--user-config=/tmp/al5/spack-stage/spack-stage-boost-1.76.0-2ykrczt6n7igaz645shnq2pscuosk3al/spack-src/user-config.jam'
>>>>> 'variant=release' '--disable-icu' '-s'
>>>>> 'BZIP2_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/bzip2-1.0.8-lhu2fvk3ssx5w66tth4tp6kjorlgfj2u/include'
>>>>> '-s'
>>>>> 'BZIP2_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/bzip2-1.0.8-lhu2fvk3ssx5w66tth4tp6kjorlgfj2u/lib'
>>>>> '-s'
>>>>> 'ZLIB_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zlib-1.2.13-qemlwst2qu3yyrmrlgdnomlmzbjsgs34/include'
>>>>> '-s'
>>>>> 'ZLIB_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zlib-1.2.13-qemlwst2qu3yyrmrlgdnomlmzbjsgs34/lib'
>>>>> '-s'
>>>>> 'LZMA_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/xz-5.4.1-lux543af2a73htjercpienfpkmx64zez/include'
>>>>> '-s'
>>>>> 'LZMA_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/xz-5.4.1-lux543af2a73htjercpienfpkmx64zez/lib'
>>>>> '-s'
>>>>> 'ZSTD_INCLUDE=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zstd-1.5.5-gfcgznqbaijyvpybcdyqkpjhzc3zylg2/include'
>>>>> '-s'
>>>>> 'ZSTD_LIBPATH=/home/al5/.spack/opt/spack/linux-centos7-broadwell/gcc-12.2.0/zstd-1.5.5-gfcgznqbaijyvpybcdyqkpjhzc3zylg2/lib'
>>>>> 'link=static,shared' '--layout=system' 'toolset=gcc' 'cxxstd=17'
>>>>> 'visibility=hidden'
>>>>>
>>>>> If I run with either setting boost cxxstd=11 or 98
>>>>>
>>>>> spack install dea...@9.2.0 ^bo...@1.76.0 cxxstd=11 %g...@12.2.0,
>>>>>
>>>>> I get the error
>>>>>
>>>>> 1 out of 1 hunk FAILED -- saving rejects to file
>>>>> cmake/modules/FindGINKGO.cmake.rej
>>>>> 1 out of 1 hunk FAILED -- saving rejects to file
>>>>> cmake/modules/FindGINKGO.cmake.rej
>>>>> ==> Using cached archive:
>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/d0/d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a.tar.gz
>>>>> ==> Using cached archive:
>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/90/90ae9ddefe77fffd297bba6b070ab68d07306d4ef525ee994e8c49cef68f76f3
>>>>> ==> Using cached archive:
>>>>> /home/al5/.spack/var/spack/cache/_source-cache/archive/c9/c9884ebb0fe379c539012a225d8bcdcfe288edec8dc9d319fbfd64d8fbafba8e
>>>>> ==> Applied patch
>>>>> https://github.com/dealii/dealii/commit/3b815e21c4bfd82c792ba80e4d90314c8bb9edc9.patch?full_index=1
>>>>> ==> Patch
>>>>> https://github.com/dealii/dealii/commit/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1
>>>>> failed.
>>>>> ==> Error: ProcessError: Command exited with status 1:
>>>>> '/usr/bin/patch' '-s' '-p' '1' '-i'
>>>>> '/tmp/al5/spack-stage/spack-stage-s5pzaunz/df6c5de8d6785fce701c10575982858f3aeb4cbd.patch?full_index=1'
>>>>> '-d' '.'
>>>>>
>>>>> Can anyone advise me on what to do?
>>>>>
>>>>> Thank you,
>>>>> Andrew
>>>>>
>>>> --
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