Dear all, I think Abhishek means that the picture shows 5 A map radius.
Best Joern > On 3. Nov 2017, at 18:42, Pavel Afonine <pafon...@gmail.com> wrote: > > If by "it was truncated at 5A for clarity" you really mean you truncated all > low-resolution data from 5A and lower then I am not surprised you see funny > densities all over or don't see density where it is expected. Why? Consult a > textbook for the answer. > > All the best, > Pavel > > On Fri, Nov 3, 2017 at 3:10 AM, Abhishek Anan <rendezvous.a...@gmail.com > <mailto:rendezvous.a...@gmail.com>> wrote: > Dear Prof Schreuder > > Here are another couple of perspectives from coot. The density is too far and > isolated from the peptide chain to be an alternate conformation or > conformational change. The density of the peptide chain does not look good > because it was truncated at 5A for clarity. > > Best regards > Abhishek > > On Fri, Nov 3, 2017 at 9:33 AM, <herman.schreu...@sanofi.com > <mailto:herman.schreu...@sanofi.com>> wrote: > Dear Abhishek, > > > > To me, it looks like an alternative conformation of the peptide chain or > maybe even a conformational change with respect to the starting model. The > peptide chain does not look too well defined, despite high resolution > electron density. > > > > Best, > > Herman > > > > Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK > <mailto:CCP4BB@JISCMAIL.AC.UK>] Im Auftrag von Abhishek Anan > Gesendet: Freitag, 3. November 2017 09:26 > An: CCP4BB@JISCMAIL.AC.UK <mailto:CCP4BB@JISCMAIL.AC.UK> > Betreff: [EXTERNAL] [ccp4bb] another unknown density problem > > > > Hi all, > > I have an "unknown" density in the map. I have tried to fit it to PEG but it > doesn't fit very well. I was wondering if there are other PEG-related or > other molecules I could try. > > The crystal grew in TRIS-HCl and PEG MME 2K. > > Thank you > > Abhishek > > >
