Hi there!
I got crystals from some synthetic peptides I bought, they are 30
residues long and are supposed to form a coiled coil. I collected
various data sets (home source, Brookhaven and Diamond), including some
at the resolution of 1.65 A, for which the space group appears to be
C222 or C2221. The unit cell is small, 22.67, 88.06, 26.13, and the
Matheus Coefficient indicates that's there's only one helix in the
asymmetric unit and a 25% solvent content.
I have tried A LOT of Molecular Replacement using Phaser and Phenix
AutoMR. I'm using a 80% identity coiled coil helix as search model. The
programs give me solutions with "reasonable" maps, but it is never
possible to refine to achieve Rvalues below 0.40. Additionally, maps
from different solutions look reasonable, so I'm thinking these are all
bias.
I have 5 other synthetic 30 residues peptides (that crystallize in
different space groups and diffract to lower resolutions), including a
SelenoMethionine (SM) derivative (but it does not have enough anomalous
signal, ASU is too big, it is possible that the SM are disordered). I'm
stuck on this since March.
Regarding the search model, I already tried trimming some or all
side chains and removing 2, 3 or 5 residues on each/both sides. I also
tried other search models. Maybe some "magic" combination of parameters
on Phaser or other programs can help me.
What is your advice regarding how to proceed with MR? Is there some
program, procedure, parameter, pray or human sacrifice that could help me?
Thank you.
Regards,
Napo
- [ccp4bb] MR - small coiled coil, 1.65A... Napoleão Valadares
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