Thanks a lot, Martin, I'll take care of that. I guess that's a new function in that package (because it always worked before)
And yes, I am planning to start removing dependencies. artMS has one function that tries to help the very inexperienced R users by doing a lot of things for them out of the box. Thank you very much! David On Thu, Oct 22, 2020 at 12:25 AM Martin Morgan <mtmorgan.b...@gmail.com> wrote: > Your NAMESPACE has > > import(ComplexHeatmap) > ... > import(pheatmap) > > and both packages have a function pheatmap -- the import from > ComplexHeatmap is being replaced by the import from pheatmap. > > In other places your NAMESPACE has lines like > > import(seqinr, except = c(zscore, count, a)) > > so you'd like to do the same for one or the other of ComplexHeatmap / > pheatmap. It looks like the roxygen for this is > > #' @rawNamespace import(ComplexHeatmap, except = c(pheatmap)) > > ...but I wonder whether you really want to import both packages?? Does > your package really need functionality from each? I see from > > https://bioconductor.org/packages/artMS > > that your package has 200 dependencies, which is a lot and means that > changes in any of those could break your package -- it sounds like a quite > fragile situation. > > Martin > > > > On 10/22/20, 2:13 AM, "Bioc-devel on behalf of David Jimenez-Morales" < > bioc-devel-boun...@r-project.org on behalf of biodavi...@gmail.com> wrote: > > Dear bioc team, > > I am getting the following warning > <http://bioconductor.org/checkResults/devel/bioc-LATEST/artMS/> that > I do > not understand and cannot reproduce locally (and my search online > didn't > help): > > * checking whether package ‘artMS’ can be installed ... WARNING > Found the following significant warnings: > Warning: replacing previous import ‘ComplexHeatmap::pheatmap’ by > ‘pheatmap::pheatmap’ when loading ‘artMS’ > See ‘/home/biocbuild/bbs-3.12-bioc/meat/artMS.Rcheck/00install.out’ > for details. > > What does this mean? How could I get rid of the warning? > > Thanks a lot! > David > > > Found the following significant warnings: > Warning: replacing previous import ‘ComplexHeatmap::pheatmap’ by > ‘pheatmap::pheatmap’ when loading > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
