Hi Martin, Ok I miss this information. Thanks for the information, I will push new changes to the master branch.
Thanks again for the support, Regards, Laure Cougnaud, Statistical Consultant, OpenAnalytics ----- Original Message ----- > From: "Martin Morgan" <mtmorgan.b...@gmail.com> > To: "Laure Cougnaud" <laure.cougn...@openanalytics.eu>, "bioc-devel" > <bioc-devel@r-project.org> > Sent: Wednesday, October 14, 2020 12:33:22 PM > Subject: Re: [Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base > need your attention! > 3.11 is the current release version. Commits to the current release version > were > disabled yesterday. > > https://bioconductor.org/developers/release-schedule/ > > You want to push changes to the devel ('master') branch. > > Martin > >On 10/14/20, 5:34 AM, "Bioc-devel on behalf of Laure Cougnaud" ><bioc-devel-boun...@r-project.org on behalf of >laure.cougn...@openanalytics.eu> >wrote: > > Dear Bioc-devel, > > I am experiencing some issues to push changes to the release 3.11 branch > of my > package (a4Base) in Bioconductor, in order to fix the errors mentioned in > the [ > https://bioconductor.org/checkResults/3.11/bioc-LATEST/a4Base/ | > build/check > report for BioC 3.11 ] . > I could successfully push the changes in the 'master' branch to the > Bioconductor > repository. > > I followed the steps in [ > https://bioconductor.org/developers/how-to/git/maintain-bioc-only/ | > 'Maintain > a Bioconductor-only repository' ] for an existing package: > > 1. git checkout -b RELEASE_3_11 BioC/RELEASE_3_11 # (my local remote > is labelled > 'BioC') > 2. make some updates > 3. git add . > 4. git commit -m 'commit message' > 5. git status On branch RELEASE_3_11 Your branch is ahead of > 'BioC/RELEASE_3_11' > by 1 commit. (use "git push" to publish your local commits) nothing to > commit, > working tree clean > 6. git push BioC RELEASE_3_11 Counting objects: 7, done. Delta > compression using > up to 4 threads. Compressing objects: 100% (7/7), done. Writing > objects: 100% > (7/7), 1.04 KiB | 1.04 MiB/s, done. Total 7 (delta 4), reused 0 (delta > 0) > remote: FATAL: W refs/heads/RELEASE_3_11 packages/a4Base l.cougnaud > DENIED by > fallthru remote: error: hook declined to update > refs/heads/RELEASE_3_11 To > git.bioconductor.org:packages/a4Base ! [remote rejected] RELEASE_3_11 > -> > RELEASE_3_11 (hook declined) error: failed to push some refs to > 'g...@git.bioconductor.org:packages/a4Base' > > Would it be possible to help me out for this issue? Do I have proper > permissions > to push changes to the devel version of Bioconductor? > > Many thanks in advance for the support, > > Regards, > > Laure Cougnaud, > Statistical Consultant, OpenAnalytics > > > From: "Hervé Pagès" <hpages.on.git...@gmail.com> > > To: "Laure Cougnaud" <laure.cougn...@openanalytics.eu> > > Cc: "Tobias Verbeke" <tobias.verb...@openanalytics.eu> > > Sent: Friday, October 9, 2020 7:34:08 PM > > Subject: Re: BioC 3.12 coming soon, package a4 and a4Base need your > attention! > > > Hi Laure, > > > On 10/9/20 08:14, Laure Cougnaud wrote:> Hi Hervé, > > >> I will investigate the issue further on Monday, I recently got some > issues to > >> pull the latest version of the a4Base package from the Bioconductor git: > > >> git pull BioC master > >> g...@git.bioconductor.org: Permission denied (publickey). > >> fatal: Could not read from remote repository. > > >> I updated my SSH key in GitHub. If I understood correctly, it could > take a few > >> hours to have it synchronized in the Bioconductor platform, so I will > test > >> again on Monday. > > Hopefully that will work. Please ask on the bioc-devel mailing list if > > you keep having problems to access the Bioconductor git server. I don't > > manage git access issues. > > > Thanks and have a nice week-end, > > H. > > >> Thanks in advance for your understanding, have all a nice week-end, > > >> Regards, > > >> Laure Cougnaud, > >> Statistical Consultant, OpenAnalytics > > >> ----- Original Message ----- > > >>> From: "Laure Cougnaud" <laure.cougn...@openanalytics.eu> > >>> To: "Hervé Pagès" <hpages.on.git...@gmail.com> > >>> Cc: "Tobias Verbeke" <tobias.verb...@openanalytics.eu> > >>> Sent: Friday, October 9, 2020 1:23:38 PM > >>> Subject: Re: BioC 3.12 coming soon, package a4 and a4Base need your > attention! > >>> Dear Hervé, > > >>> Thanks for the reminder, I will look at the issues in the course of > today. > > >>> Sorry for the later reply, > > >>> Regards, > > >>> Laure Cougnaud, > >>> Statistical Consultant, OpenAnalytics > > >>> ----- Original Message ----- > > >>>> From: "Hervé Pagès" <hpages.on.git...@gmail.com> > >>>> To: "Tobias Verbeke" <tobias.verb...@openanalytics.eu>, "Laure > Cougnaud" > >>>> <laure.cougn...@openanalytics.eu> > >>>> Sent: Friday, October 9, 2020 9:07:06 AM > >>>> Subject: BioC 3.12 coming soon, package a4 and a4Base need your > attention! > >>>> Dear a4 and a4Base maintainers, > > >>>> The Bioconductor Build System is reporting a BUILD error on all > >>>> platforms for the devel version of the a4 package: > > >>>> https://bioconductor.org/checkResults/3.12/bioc-LATEST/a4/ > > >>>> And also a CHECK error on Windows for the devel and release versions > of > >>>> the a4Base package: > > >>>> https://bioconductor.org/checkResults/3.12/bioc-LATEST/a4Base/ > >>>> https://bioconductor.org/checkResults/3.11/bioc-LATEST/a4Base/ > > >>>> Please take the time to address these issues. > > >>>> Note that the a4Base error on Windows seems to be a 32-bit specific > >>>> error (the examples for spectralMap() fail on 32-bit Windows but not > on > >>>> 64-bit Windows). It has been reported in several past versions of > >>>> Bioconductor: > > >>>> https://bioconductor.org/checkResults/3.10/bioc-LATEST/a4Base/ > >>>> https://bioconductor.org/checkResults/3.9/bioc-LATEST/a4Base/ > >>>> https://bioconductor.org/checkResults/3.7/bioc-LATEST/a4Base/ > > >>>> If a4Base cannot be fixed on 32-bit Windows, we will mark it as > >>>> unsupported on this platform. > > >>>> Keep in mind that the packages need to pass 'R CMD build' and 'R CMD > >>>> check' with no error for the next Bioconductor release (BioC 3.12) > >>>> scheduled for Wednesday October 28. See our release schedule here for > >>>> more information: > > >>>> https://bioconductor.org/developers/release-schedule/ > > >>>> Don't hesitate to ask on the bioc-devel mailing list if you have > >>>> questions or concerns about this. > > >>>> Thanks for your contribution to Bioconductor. > > >>>> Best, > >>>> H. > > >>>> -- > >>>> Hervé Pagès > > >>>> Bioconductor Core Team > >>>> hpages.on.git...@gmail.com > > -- > > Hervé Pagès > > > Bioconductor Core Team > > hpages.on.git...@gmail.com > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
