Your NAMESPACE has import(ComplexHeatmap) ... import(pheatmap)
and both packages have a function pheatmap -- the import from ComplexHeatmap is being replaced by the import from pheatmap. In other places your NAMESPACE has lines like import(seqinr, except = c(zscore, count, a)) so you'd like to do the same for one or the other of ComplexHeatmap / pheatmap. It looks like the roxygen for this is #' @rawNamespace import(ComplexHeatmap, except = c(pheatmap)) ...but I wonder whether you really want to import both packages?? Does your package really need functionality from each? I see from https://bioconductor.org/packages/artMS that your package has 200 dependencies, which is a lot and means that changes in any of those could break your package -- it sounds like a quite fragile situation. Martin On 10/22/20, 2:13 AM, "Bioc-devel on behalf of David Jimenez-Morales" <bioc-devel-boun...@r-project.org on behalf of biodavi...@gmail.com> wrote: Dear bioc team, I am getting the following warning <http://bioconductor.org/checkResults/devel/bioc-LATEST/artMS/> that I do not understand and cannot reproduce locally (and my search online didn't help): * checking whether package ‘artMS’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import ‘ComplexHeatmap::pheatmap’ by ‘pheatmap::pheatmap’ when loading ‘artMS’ See ‘/home/biocbuild/bbs-3.12-bioc/meat/artMS.Rcheck/00install.out’ for details. What does this mean? How could I get rid of the warning? Thanks a lot! David Found the following significant warnings: Warning: replacing previous import ‘ComplexHeatmap::pheatmap’ by ‘pheatmap::pheatmap’ when loading [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
