3.11 is the current release version. Commits to the current release version were disabled yesterday.
https://bioconductor.org/developers/release-schedule/ You want to push changes to the devel ('master') branch. Martin On 10/14/20, 5:34 AM, "Bioc-devel on behalf of Laure Cougnaud" <bioc-devel-boun...@r-project.org on behalf of laure.cougn...@openanalytics.eu> wrote: Dear Bioc-devel, I am experiencing some issues to push changes to the release 3.11 branch of my package (a4Base) in Bioconductor, in order to fix the errors mentioned in the [ https://bioconductor.org/checkResults/3.11/bioc-LATEST/a4Base/ | build/check report for BioC 3.11 ] . I could successfully push the changes in the 'master' branch to the Bioconductor repository. I followed the steps in [ https://bioconductor.org/developers/how-to/git/maintain-bioc-only/ | 'Maintain a Bioconductor-only repository' ] for an existing package: 1. git checkout -b RELEASE_3_11 BioC/RELEASE_3_11 # (my local remote is labelled 'BioC') 2. make some updates 3. git add . 4. git commit -m 'commit message' 5. git status On branch RELEASE_3_11 Your branch is ahead of 'BioC/RELEASE_3_11' by 1 commit. (use "git push" to publish your local commits) nothing to commit, working tree clean 6. git push BioC RELEASE_3_11 Counting objects: 7, done. Delta compression using up to 4 threads. Compressing objects: 100% (7/7), done. Writing objects: 100% (7/7), 1.04 KiB | 1.04 MiB/s, done. Total 7 (delta 4), reused 0 (delta 0) remote: FATAL: W refs/heads/RELEASE_3_11 packages/a4Base l.cougnaud DENIED by fallthru remote: error: hook declined to update refs/heads/RELEASE_3_11 To git.bioconductor.org:packages/a4Base ! [remote rejected] RELEASE_3_11 -> RELEASE_3_11 (hook declined) error: failed to push some refs to 'g...@git.bioconductor.org:packages/a4Base' Would it be possible to help me out for this issue? Do I have proper permissions to push changes to the devel version of Bioconductor? Many thanks in advance for the support, Regards, Laure Cougnaud, Statistical Consultant, OpenAnalytics > From: "Hervé Pagès" <hpages.on.git...@gmail.com> > To: "Laure Cougnaud" <laure.cougn...@openanalytics.eu> > Cc: "Tobias Verbeke" <tobias.verb...@openanalytics.eu> > Sent: Friday, October 9, 2020 7:34:08 PM > Subject: Re: BioC 3.12 coming soon, package a4 and a4Base need your attention! > Hi Laure, > On 10/9/20 08:14, Laure Cougnaud wrote:> Hi Hervé, >> I will investigate the issue further on Monday, I recently got some issues to >> pull the latest version of the a4Base package from the Bioconductor git: >> git pull BioC master >> g...@git.bioconductor.org: Permission denied (publickey). >> fatal: Could not read from remote repository. >> I updated my SSH key in GitHub. If I understood correctly, it could take a few >> hours to have it synchronized in the Bioconductor platform, so I will test >> again on Monday. > Hopefully that will work. Please ask on the bioc-devel mailing list if > you keep having problems to access the Bioconductor git server. I don't > manage git access issues. > Thanks and have a nice week-end, > H. >> Thanks in advance for your understanding, have all a nice week-end, >> Regards, >> Laure Cougnaud, >> Statistical Consultant, OpenAnalytics >> ----- Original Message ----- >>> From: "Laure Cougnaud" <laure.cougn...@openanalytics.eu> >>> To: "Hervé Pagès" <hpages.on.git...@gmail.com> >>> Cc: "Tobias Verbeke" <tobias.verb...@openanalytics.eu> >>> Sent: Friday, October 9, 2020 1:23:38 PM >>> Subject: Re: BioC 3.12 coming soon, package a4 and a4Base need your attention! >>> Dear Hervé, >>> Thanks for the reminder, I will look at the issues in the course of today. >>> Sorry for the later reply, >>> Regards, >>> Laure Cougnaud, >>> Statistical Consultant, OpenAnalytics >>> ----- Original Message ----- >>>> From: "Hervé Pagès" <hpages.on.git...@gmail.com> >>>> To: "Tobias Verbeke" <tobias.verb...@openanalytics.eu>, "Laure Cougnaud" >>>> <laure.cougn...@openanalytics.eu> >>>> Sent: Friday, October 9, 2020 9:07:06 AM >>>> Subject: BioC 3.12 coming soon, package a4 and a4Base need your attention! >>>> Dear a4 and a4Base maintainers, >>>> The Bioconductor Build System is reporting a BUILD error on all >>>> platforms for the devel version of the a4 package: >>>> https://bioconductor.org/checkResults/3.12/bioc-LATEST/a4/ >>>> And also a CHECK error on Windows for the devel and release versions of >>>> the a4Base package: >>>> https://bioconductor.org/checkResults/3.12/bioc-LATEST/a4Base/ >>>> https://bioconductor.org/checkResults/3.11/bioc-LATEST/a4Base/ >>>> Please take the time to address these issues. >>>> Note that the a4Base error on Windows seems to be a 32-bit specific >>>> error (the examples for spectralMap() fail on 32-bit Windows but not on >>>> 64-bit Windows). It has been reported in several past versions of >>>> Bioconductor: >>>> https://bioconductor.org/checkResults/3.10/bioc-LATEST/a4Base/ >>>> https://bioconductor.org/checkResults/3.9/bioc-LATEST/a4Base/ >>>> https://bioconductor.org/checkResults/3.7/bioc-LATEST/a4Base/ >>>> If a4Base cannot be fixed on 32-bit Windows, we will mark it as >>>> unsupported on this platform. >>>> Keep in mind that the packages need to pass 'R CMD build' and 'R CMD >>>> check' with no error for the next Bioconductor release (BioC 3.12) >>>> scheduled for Wednesday October 28. See our release schedule here for >>>> more information: >>>> https://bioconductor.org/developers/release-schedule/ >>>> Don't hesitate to ask on the bioc-devel mailing list if you have >>>> questions or concerns about this. >>>> Thanks for your contribution to Bioconductor. >>>> Best, >>>> H. >>>> -- >>>> Hervé Pagès >>>> Bioconductor Core Team >>>> hpages.on.git...@gmail.com > -- > Hervé Pagès > Bioconductor Core Team > hpages.on.git...@gmail.com [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
