Values from another maschine:

Intel(R) Core(TM) i5-2410M CPU @ 2.30GHz

time ./build/src/graphic/wl_make_texture_atlas 8192
Graphics: Try to set Videomode 1x1
Graphics: OpenGL: Version "3.0 Mesa 11.1.0"
Graphics: OpenGL: Double buffering enabled
Graphics: OpenGL: Max texture size: 8192

[...]

real    1m16.709s
user    1m2.800s
sys     0m10.137s

ls -l outpu*
-rw-r--r-- 1 kaputtnik kaputtnik  4961263  8. Jan 15:36 output.lua
-rw-r--r-- 1 kaputtnik kaputtnik 33675230  8. Jan 15:36 output_00.png
-rw-r--r-- 1 kaputtnik kaputtnik 35077200  8. Jan 15:36 output_01.png

This laptop uses only integrated GPU. I will try to activate the video card and 
test again.
-- 
https://code.launchpad.net/~widelands-dev/widelands/full_texture_atlas/+merge/281909
Your team Widelands Developers is requested to review the proposed merge of 
lp:~widelands-dev/widelands/full_texture_atlas into lp:widelands.

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