Yep, there is is. [bl10@login2 USlogsminus10]$ module show netcdf/4.1.3 ------------------------------------------------------------------- /opt/apps/modulefiles/netcdf/4.1.3:
module load openmpi/1.4.4-intel prepend-path PATH /opt/apps/netcdf/4.1.3/bin:/opt/apps/netcdf/4.1.3/deps/hdf5/1.8.7/bin prepend-path LD_LIBRARY_PATH /opt/apps/netcdf/4.1.3/lib:/opt/apps/netcdf/4.1.3/deps/hdf5/1.8.7/lib:/opt/apps/netcdf/4.1.3/deps/szip/2.1/lib prepend-path MANPATH /opt/apps/netcdf/4.1.3/share/man ------------------------------------------------------------------- On Wed, May 21, 2014 at 1:34 PM, Douglas L Reeder <d...@centurylink.net>wrote: > Ben, > > The netcdf/4.1.3 module maybe loading the openmpi/1.4.4 module. Can you do > module show the netcdf module file to to see if there is a module load > openmpi command. > > Doug Reeder > > On May 21, 2014, at 12:23 PM, Ben Lash <b...@rice.edu> wrote: > > I just wanted to follow up for anyone else who got a similar problem - > module load netcdf/4.1.3 *also* loaded openmpi/1.4.4. Don't ask me why. > My code doesn't seem to fail as gracefully but otherwise works now. Thanks. > > > On Sat, May 17, 2014 at 6:02 AM, Jeff Squyres (jsquyres) < > jsquy...@cisco.com> wrote: > >> Ditto -- Lmod looks pretty cool. Thanks for the heads up. >> >> >> On May 16, 2014, at 6:23 PM, Douglas L Reeder <d...@centurylink.net> >> wrote: >> >> > Maxime, >> > >> > I was unaware of Lmod. Thanks for bringing it to my attention. >> > >> > Doug >> > On May 16, 2014, at 4:07 PM, Maxime Boissonneault < >> maxime.boissonnea...@calculquebec.ca> wrote: >> > >> >> Instead of using the outdated and not maintained Module environment, >> why not use Lmod : https://www.tacc.utexas.edu/tacc-projects/lmod >> >> >> >> It is a drop-in replacement for Module environment that supports all >> of their features and much, much more, such as : >> >> - module hierarchies >> >> - module properties and color highlighting (we use it to higlight >> bioinformatic modules or tools for example) >> >> - module caching (very useful for a parallel filesystem with tons of >> modules) >> >> - path priorities (useful to make sure personal modules take >> precendence over system modules) >> >> - export module tree to json >> >> >> >> It works like a charm, understand both TCL and Lua modules and is >> actively developped and debugged. There are litteraly new features every >> month or so. If it does not do what you want, odds are that the developper >> will add it shortly (I've had it happen). >> >> >> >> Maxime >> >> >> >> Le 2014-05-16 17:58, Douglas L Reeder a écrit : >> >>> Ben, >> >>> >> >>> You might want to use module (source forge) to manage paths to >> different mpi implementations. It is fairly easy to set up and very robust >> for this type of problem. You would remove contentious application paths >> from you standard PATH and then use module to switch them in and out as >> needed. >> >>> >> >>> Doug Reeder >> >>> On May 16, 2014, at 3:39 PM, Ben Lash <b...@rice.edu> wrote: >> >>> >> >>>> My cluster has just upgraded to a new version of MPI, and I'm using >> an old one. It seems that I'm having trouble compiling due to the compiler >> wrapper file moving (full error here: http://pastebin.com/EmwRvCd9) >> >>>> "Cannot open configuration file >> /opt/apps/openmpi/1.4.4-intel/share/openmpi/mpif90-wrapper-data.txt" >> >>>> >> >>>> I've found the file on the cluster at >> /opt/apps/openmpi/retired/1.4.4-intel/share/openmpi/mpif90-wrapper-data.txt >> >>>> How do I tell the old mpi wrapper where this file is? >> >>>> I've already corrected one link to mpich -> >> /opt/apps/openmpi/retired/1.4.4-intel/, which is in the software I'm trying >> to recompile's lib folder (/home/bl10/CMAQv5.0.1/lib/x86_64/ifort). Thanks >> for any ideas. I also tried changing $pkgdatadir based on what I read here: >> >>>> >> http://www.open-mpi.org/faq/?category=mpi-apps#default-wrapper-compiler-flags >> >>>> >> >>>> Thanks. >> >>>> >> >>>> --Ben L >> >>>> _______________________________________________ >> >>>> users mailing list >> >>>> us...@open-mpi.org >> >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >>> >> >>> >> >>> >> >>> _______________________________________________ >> >>> users mailing list >> >>> >> >>> us...@open-mpi.org >> >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> >> >> >> -- >> >> --------------------------------- >> >> Maxime Boissonneault >> >> Analyste de calcul - Calcul Québec, Université Laval >> >> Ph. D. en physique >> >> >> >> _______________________________________________ >> >> users mailing list >> >> us...@open-mpi.org >> >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> > >> > _______________________________________________ >> > users mailing list >> > us...@open-mpi.org >> > http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> > > > -- > --Ben L > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > -- --Ben L
