Ben, The netcdf/4.1.3 module maybe loading the openmpi/1.4.4 module. Can you do module show the netcdf module file to to see if there is a module load openmpi command.
Doug Reeder On May 21, 2014, at 12:23 PM, Ben Lash <b...@rice.edu> wrote: > I just wanted to follow up for anyone else who got a similar problem - module > load netcdf/4.1.3 *also* loaded openmpi/1.4.4. Don't ask me why. My code > doesn't seem to fail as gracefully but otherwise works now. Thanks. > > > On Sat, May 17, 2014 at 6:02 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> > wrote: > Ditto -- Lmod looks pretty cool. Thanks for the heads up. > > > On May 16, 2014, at 6:23 PM, Douglas L Reeder <d...@centurylink.net> wrote: > > > Maxime, > > > > I was unaware of Lmod. Thanks for bringing it to my attention. > > > > Doug > > On May 16, 2014, at 4:07 PM, Maxime Boissonneault > > <maxime.boissonnea...@calculquebec.ca> wrote: > > > >> Instead of using the outdated and not maintained Module environment, why > >> not use Lmod : https://www.tacc.utexas.edu/tacc-projects/lmod > >> > >> It is a drop-in replacement for Module environment that supports all of > >> their features and much, much more, such as : > >> - module hierarchies > >> - module properties and color highlighting (we use it to higlight > >> bioinformatic modules or tools for example) > >> - module caching (very useful for a parallel filesystem with tons of > >> modules) > >> - path priorities (useful to make sure personal modules take precendence > >> over system modules) > >> - export module tree to json > >> > >> It works like a charm, understand both TCL and Lua modules and is actively > >> developped and debugged. There are litteraly new features every month or > >> so. If it does not do what you want, odds are that the developper will add > >> it shortly (I've had it happen). > >> > >> Maxime > >> > >> Le 2014-05-16 17:58, Douglas L Reeder a écrit : > >>> Ben, > >>> > >>> You might want to use module (source forge) to manage paths to different > >>> mpi implementations. It is fairly easy to set up and very robust for this > >>> type of problem. You would remove contentious application paths from you > >>> standard PATH and then use module to switch them in and out as needed. > >>> > >>> Doug Reeder > >>> On May 16, 2014, at 3:39 PM, Ben Lash <b...@rice.edu> wrote: > >>> > >>>> My cluster has just upgraded to a new version of MPI, and I'm using an > >>>> old one. It seems that I'm having trouble compiling due to the compiler > >>>> wrapper file moving (full error here: http://pastebin.com/EmwRvCd9) > >>>> "Cannot open configuration file > >>>> /opt/apps/openmpi/1.4.4-intel/share/openmpi/mpif90-wrapper-data.txt" > >>>> > >>>> I've found the file on the cluster at > >>>> /opt/apps/openmpi/retired/1.4.4-intel/share/openmpi/mpif90-wrapper-data.txt > >>>> How do I tell the old mpi wrapper where this file is? > >>>> I've already corrected one link to mpich -> > >>>> /opt/apps/openmpi/retired/1.4.4-intel/, which is in the software I'm > >>>> trying to recompile's lib folder > >>>> (/home/bl10/CMAQv5.0.1/lib/x86_64/ifort). Thanks for any ideas. I also > >>>> tried changing $pkgdatadir based on what I read here: > >>>> http://www.open-mpi.org/faq/?category=mpi-apps#default-wrapper-compiler-flags > >>>> > >>>> Thanks. > >>>> > >>>> --Ben L > >>>> _______________________________________________ > >>>> users mailing list > >>>> us...@open-mpi.org > >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>> > >>> > >>> > >>> _______________________________________________ > >>> users mailing list > >>> > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> -- > >> --------------------------------- > >> Maxime Boissonneault > >> Analyste de calcul - Calcul Québec, Université Laval > >> Ph. D. en physique > >> > >> _______________________________________________ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > -- > --Ben L > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
