Did the node list itself as a seed node in cassandra.yaml? Unless something has changed, a node that considers itself a seed will not auto bootstrap. Although I haven't tried it, I think running 'nodetool rebuild' will cause it to stream in the data it needs without doing a repair.
On Wed, Jan 30, 2013 at 9:30 PM, Wei Zhu <wz1...@yahoo.com> wrote: > Some updates: > Since we still have not fully turned on the system. We did something crazy > today. We tried to treat the node as dead one. (My boss wants us to > practice replacing a dead node before going to full production) and boot > strap it. Here is what we did: > > > - drain the node > - check nodetool on other nodes, and this node is marked down (the > token for this node is 100) > - clear the data, commit log, saved cache > - change initial_token from 100 to 99 in the yaml file > - start the node > - check nodetool, the down node of 100 disappeared by itself (!!) and > new node with token 99 showed up > - checked log, see the message saying bootstrap completed. But only a > couple of MB streamed. > - nodetool movetoken 98 > - nodetool, see the node with token 98 comes up. > - check log, see the message saying bootstrap completed. But still > only a couple of MB streamed. > > The only reason I can think of is that the new node has the same IP as the > "dead" node we tried to replace? Will that cause the symptom of no data > streamed from other nodes? Other nodes still think the node had all the > data? > > We had to do nodetool repair -pr to bring in the data. After 3 hours, > 150G transferred. And no surprise, pending compaction tasks are now at > 30K. There are about 30K SStable transferred and I guess all of them needs > to be compacted since we use LCS. > > My concern is that if we did nothing wrong, replacing a dead node will > cause such a hugh back log of pending compaction. It might take a week to > clear that off. And we have RF = 3, we still need to bring in the data for > the other two replicates since we use "pr" for nodetool repair. It will > take about 3 weeks to fully replace a 200G node using LCS? We tried > everything we can to speed up the compaction and no luck. The only thing I > can think of is to increase the default size of SSTable, so less number of > compaction will be needed. Can I just change it in yaml and restart C* and > it will correct itself? Any side effect? Since we are using SSD, a bit > bigger SSD won't slow down the read too much, I suppose that is the main > concern for bigger size of SSTable? > > I think 1.2 comes with parallel LC which should help the situation. But we > are not going to upgrade for a little while. > > Did I miss anything? It might not be practical to use LCS for 200G node? > But if we use Sized compaction, we need to have at least 400G for the > HD...Although SSD is cheap now, still hard to convince the management. > three replicates + double the Disk for compaction? that is 6 times of the > real data size! > > Sorry for the long email. Any suggestion or advice? > > Thanks. > -Wei > > ------------------------------ > *From: *"aaron morton" <aa...@thelastpickle.com> > *To: *"Cassandra User" <user@cassandra.apache.org> > *Sent: *Tuesday, January 29, 2013 12:59:42 PM > > *Subject: *Re: Cassandra pending compaction tasks keeps increasing > > * Will try it tomorrow. Do I need to restart server to change the log > level? > > You can set it via JMX, and supposedly log4j is configured to watch the > config file. > > Cheers > > ----------------- > Aaron Morton > Freelance Cassandra Developer > New Zealand > > @aaronmorton > http://www.thelastpickle.com > > On 29/01/2013, at 9:36 PM, Wei Zhu <wz1...@yahoo.com> wrote: > > Thanks for the reply. Here is some information: > > Do you have wide rows ? Are you seeing logging about "Compacting wide > rows" ? > > * I don't see any log about "wide rows" > > Are you seeing GC activity logged or seeing CPU steal on a VM ? > > * There is some GC, but CPU general is under 20%. We have heap size of 8G, > RAM is at 72G. > > Have you tried disabling multithreaded_compaction ? > > * By default, it's disabled. We enabled it, but doesn't see much > difference. Even a little slower with it's enabled. Is it bad to enable it? > We have SSD, according to comment in yaml, it should help while using SSD. > > Are you using Key Caches ? Have you tried disabling > compaction_preheat_key_cache? > > * We have fairly big Key caches, we set as 10% of Heap which is 800M. Yes, > compaction_preheat_key_cache is disabled. > > Can you enabled DEBUG level logging and make them available ? > > * Will try it tomorrow. Do I need to restart server to change the log > level? > > > -Wei > > ------------------------------ > > From: "aaron morton" <aa...@thelastpickle.com> > To: user@cassandra.apache.org > Sent: Monday, January 28, 2013 11:31:42 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > > > > > > > * Why nodetool repair increases the data size that much? It's not likely > that much data needs to be repaired. Will that happen for all the > subsequent repair? > Repair only detects differences in entire rows. If you have very wide rows > then small differences in rows can result in a large amount of streaming. > Streaming creates new SSTables on the receiving side, which then need to > be compacted. So repair often results in compaction doing it's thing for a > while. > > > > > > > > > * How to make LCS run faster? After almost a day, the LCS tasks only > dropped by 1000. I am afraid it will never catch up. We set > > > This is going to be tricky to diagnose, sorry for asking silly > questions... > > > Do you have wide rows ? Are you seeing logging about "Compacting wide > rows" ? > Are you seeing GC activity logged or seeing CPU steal on a VM ? > Have you tried disabling multithreaded_compaction ? > Are you using Key Caches ? Have you tried disabling > compaction_preheat_key_cache? > Can you enabled DEBUG level logging and make them available ? > > > Cheers > > > > > > > > > ----------------- > Aaron Morton > Freelance Cassandra Developer > New Zealand > > > @aaronmorton > http://www.thelastpickle.com > > > On 29/01/2013, at 8:59 AM, Derek Williams < de...@fyrie.net > wrote: > > > > I could be wrong about this, but when repair is run, it isn't just values > that are streamed between nodes, it's entire sstables. This causes a lot of > duplicate data to be written which was already correct on the node, which > needs to be compacted away. > > > As for speeding it up, no idea. > > > > On Mon, Jan 28, 2013 at 12:16 PM, Wei Zhu < wz1...@yahoo.com > wrote: > > > Any thoughts? > > > Thanks. > -Wei > > ----- Original Message ----- > > From: "Wei Zhu" < wz1...@yahoo.com > > To: user@cassandra.apache.org > > Sent: Friday, January 25, 2013 10:09:37 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > > > To recap the problem, > 1.1.6 on SSD, 5 nodes, RF = 3, one CF only. > After data load, initially all 5 nodes have very even data size (135G, > each). I ran nodetool repair -pr on node 1 which have replicates on node 2, > node 3 since we set RF = 3. > It appears that huge amount of data got transferred. Node 1 has 220G, node > 2, 3 have around 170G. Pending LCS task on node 1 is 15K and node 2, 3 have > around 7K each. > Questions: > > * Why nodetool repair increases the data size that much? It's not likely > that much data needs to be repaired. Will that happen for all the > subsequent repair? > * How to make LCS run faster? After almost a day, the LCS tasks only > dropped by 1000. I am afraid it will never catch up. We set > > > * compaction_throughput_mb_per_sec = 500 > * multithreaded_compaction: true > > > > Both Disk and CPU util are less than 10%. I understand LCS is single > threaded, any chance to speed it up? > > > * We use default SSTable size as 5M, Will increase the size of SSTable > help? What will happen if I change the setting after the data is loaded. > > > Any suggestion is very much appreciated. > > -Wei > > > ----- Original Message ----- > > From: "Wei Zhu" < wz1...@yahoo.com > > To: user@cassandra.apache.org > > Sent: Thursday, January 24, 2013 11:46:04 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > I believe I am running into this one: > > https://issues.apache.org/jira/browse/CASSANDRA-4765 > > By the way, I am using 1.1.6 (I though I was using 1.1.7) and this one is > fixed in 1.1.7. > > > > ----- Original Message ----- > > From: "Wei Zhu" < wz1...@yahoo.com > > To: user@cassandra.apache.org > Sent: Thursday, January 24, 2013 11:18:59 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > Thanks Derek, > in the cassandra-env.sh, it says > > # reduce the per-thread stack size to minimize the impact of Thrift > # thread-per-client. (Best practice is for client connections to > # be pooled anyway.) Only do so on Linux where it is known to be > # supported. > # u34 and greater need 180k > JVM_OPTS="$JVM_OPTS -Xss180k" > > What value should I use? Java defaults at 400K? Maybe try that first. > > Thanks. > -Wei > > ----- Original Message ----- > From: "Derek Williams" < de...@fyrie.net > > To: user@cassandra.apache.org , "Wei Zhu" < wz1...@yahoo.com > > Sent: Thursday, January 24, 2013 11:06:00 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > > Increasing the stack size in cassandra-env.sh should help you get past the > stack overflow. Doesn't help with your original problem though. > > > > On Fri, Jan 25, 2013 at 12:00 AM, Wei Zhu < wz1...@yahoo.com > wrote: > > > Well, even after restart, it throws the the same exception. I am basically > stuck. Any suggestion to clear the pending compaction tasks? Below is the > end of stack trace: > > at com.google.common.collect.Sets$1.iterator(Sets.java:578) > at com.google.common.collect.Sets$1.iterator(Sets.java:578) > at com.google.common.collect.Sets$1.iterator(Sets.java:578) > at com.google.common.collect.Sets$1.iterator(Sets.java:578) > at com.google.common.collect.Sets$3.iterator(Sets.java:667) > at com.google.common.collect.Sets$3.size(Sets.java:670) > at com.google.common.collect.Iterables.size(Iterables.java:80) > at > org.apache.cassandra.db.DataTracker.buildIntervalTree(DataTracker.java:557) > at > org.apache.cassandra.db.compaction.CompactionController.<init>(CompactionController.java:69) > > at > org.apache.cassandra.db.compaction.CompactionTask.execute(CompactionTask.java:105) > > at > org.apache.cassandra.db.compaction.LeveledCompactionTask.execute(LeveledCompactionTask.java:50) > > at > org.apache.cassandra.db.compaction.CompactionManager$1.runMayThrow(CompactionManager.java:154) > > at org.apache.cassandra.utils.WrappedRunnable.run(WrappedRunnable.java:30) > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) > at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) > at java.util.concurrent.FutureTask.run(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > at java.lang.Thread.run(Unknown Source) > > Any suggestion is very much appreciated > > -Wei > > > > ----- Original Message ----- > From: "Wei Zhu" < wz1...@yahoo.com > > To: user@cassandra.apache.org > Sent: Thursday, January 24, 2013 10:55:07 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > Do you mean 90% of the reads should come from 1 SSTable? > > By the way, after I finished the data migrating, I ran nodetool repair -pr > on one of the nodes. Before nodetool repair, all the nodes have the same > disk space usage. After I ran the nodetool repair, the disk space for that > node jumped from 135G to 220G, also there are more than 15000 pending > compaction tasks. After a while , Cassandra started to throw the exception > like below and stop compacting. I had to restart the node. By the way, we > are using 1.1.7. Something doesn't seem right. > > > INFO [CompactionExecutor:108804] 2013-01-24 22:23:10,427 > CompactionTask.java (line 109) Compacting > [SSTableReader(path='/ssd/cassandra/data/zoosk/friends/zoosk-friends-hf-753782-Data.db')] > > INFO [CompactionExecutor:108804] 2013-01-24 22:23:11,610 > CompactionTask.java (line 221) Compacted to > [/ssd/cassandra/data/zoosk/friends/zoosk-friends-hf-754996-Data.db,]. > 5,259,403 to 5,259,403 (~100% of original) bytes for 1,983 keys at > 4.268730MB/s. Time: 1,175ms. > INFO [CompactionExecutor:108805] 2013-01-24 22:23:11,617 > CompactionTask.java (line 109) Compacting > [SSTableReader(path='/ssd/cassandra/data/zoosk/friends/zoosk-friends-hf-754880-Data.db')] > > INFO [CompactionExecutor:108805] 2013-01-24 22:23:12,828 > CompactionTask.java (line 221) Compacted to > [/ssd/cassandra/data/zoosk/friends/zoosk-friends-hf-754997-Data.db,]. > 5,272,746 to 5,272,746 (~100% of original) bytes for 1,941 keys at > 4.152339MB/s. Time: 1,211ms. > ERROR [CompactionExecutor:108806] 2013-01-24 22:23:13,048 > AbstractCassandraDaemon.java (line 135) Exception in thread > Thread[CompactionExecutor:108806,1,main] > java.lang.StackOverflowError > at java.util.AbstractList$Itr.hasNext(Unknown Source) > at com.google.common.collect.Iterators$5.hasNext(Iterators.java:517) > at com.google.common.collect.Iterators$3.hasNext(Iterators.java:114) > at com.google.common.collect.Iterators$5.hasNext(Iterators.java:517) > at com.google.common.collect.Iterators$3.hasNext(Iterators.java:114) > at com.google.common.collect.Iterators$5.hasNext(Iterators.java:517) > at com.google.common.collect.Iterators$3.hasNext(Iterators.java:114) > at com.google.common.collect.Iterators$5.hasNext(Iterators.java:517) > at com.google.common.collect.Iterators$3.hasNext(Iterators.java:114) > > > ----- Original Message ----- > From: "aaron morton" < aa...@thelastpickle.com > > To: user@cassandra.apache.org > Sent: Wednesday, January 23, 2013 2:40:45 PM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > The histogram does not look right to me, too many SSTables for an LCS CF. > > > It's a symptom no a cause. If LCS is catching up though it should be more > like the distribution in the linked article. > > > Cheers > > > > > > > > > ----------------- > Aaron Morton > Freelance Cassandra Developer > New Zealand > > > @aaronmorton > http://www.thelastpickle.com > > > On 23/01/2013, at 10:57 AM, Jim Cistaro < jcist...@netflix.com > wrote: > > > > > What version are you using? Are you seeing any compaction related > assertions in the logs? > > > Might be https://issues.apache.org/jira/browse/CASSANDRA-4411 > > > We experienced this problem of the count only decreasing to a certain > number and then stopping. If you are idle, it should go to 0. I have not > seen it overestimate for zero, only for non-zero amounts. > > > As for timeouts etc, you will need to look at things like nodetool tpstats > to see if you have pending transactions queueing up. > > > Jc > > > From: Wei Zhu < wz1...@yahoo.com > > Reply-To: " user@cassandra.apache.org " < user@cassandra.apache.org >, > Wei Zhu < wz1...@yahoo.com > > Date: Tuesday, January 22, 2013 12:56 PM > To: " user@cassandra.apache.org " < user@cassandra.apache.org > > Subject: Re: Cassandra pending compaction tasks keeps increasing > > > > > > > Thanks Aaron and Jim for your reply. The data import is done. We have > about 135G on each node and it's about 28K SStables. For normal operation, > we only have about 90 writes per seconds, but when I ran nodetool > compationstats, it remains at 9 and hardly changes. I guess it's just an > estimated number. > > > When I ran histogram, > > > > Offset SSTables Write Latency Read Latency Row Size Column Count > 1 2644 0 0 0 18660057 > 2 8204 0 0 0 9824270 > 3 11198 0 0 0 6968475 > 4 4269 6 0 0 5510745 > 5 517 29 0 0 4595205 > > > > > You can see about half of the reads result in 3 SSTables. Majority of read > latency are under 5ms, only a dozen are over 10ms. We haven't fully turn on > reads yet, only 60 reads per second. We see about 20 read timeout during > the past 12 hours. Not a single warning from Cassandra Log. > > > Is it normal for Cassandra to timeout some requests? We set rpc timeout to > be 1s, it shouldn't time out any of them? > > > Thanks. > -Wei > > > > > > From: aaron morton < aa...@thelastpickle.com > > To: user@cassandra.apache.org > Sent: Monday, January 21, 2013 12:21 AM > Subject: Re: Cassandra pending compaction tasks keeps increasing > > > > The main guarantee LCS gives you is that most reads will only touch 1 row > http://www.datastax.com/dev/blog/when-to-use-leveled-compaction > > > If compaction is falling behind this may not hold. > > > nodetool cfhistograms tells you how many SSTables were read from for > reads. It's a recent histogram that resets each time you read from it. > > > Also, parallel levelled compaction in 1.2 > http://www.datastax.com/dev/blog/performance-improvements-in-cassandra-1-2 > > > Cheers > > > > > > > > > ----------------- > Aaron Morton > Freelance Cassandra Developer > New Zealand > > > @aaronmorton > http://www.thelastpickle.com > > > On 20/01/2013, at 7:49 AM, Jim Cistaro < jcist...@netflix.com > wrote: > > > > > > 1) In addition to iostat, dstat is a good tool to see wht kind of disck > throuput your are getting. That would be one thing to monitor. > 2) For LCS, we also see pending compactions skyrocket. During load, LCS > will create a lot of small sstables which will queue up for compaction. > 3) For us the biggest concern is not how high the pending count gets, but > how often it gets back down near zero. If your load is something you can do > in segments or pause, then you can see how fast the cluster recovers on the > compactions. > 4) One thing which we tune per cluster is the size of the files. > Increasing this from 5MB can sometimes improve things. But I forget if we > have ever changed this after starting data load. > > > Is your cluster receiving read traffic during this data migration? If so, > I would say that read latency is your best measure. If the high number of > SSTables waiting to compact is not hurting your reads, then you are > probably ok. Since you are on SSD, there is a good chance the compactions > are not hurting you. As for compactionthroughput, we set ours high for SSD. > You usually wont use it all because the compactions are usually single > threaded. Dstat will help you measure this. > > > I hope this helps, > jc > > > From: Wei Zhu < wz1...@yahoo.com > > Reply-To: " user@cassandra.apache.org " < user@cassandra.apache.org >, > Wei Zhu < wz1...@yahoo.com > > Date: Friday, January 18, 2013 12:10 PM > To: Cassandr usergroup < user@cassandra.apache.org > > Subject: Cassandra pending compaction tasks keeps increasing > > > > > > > Hi, > When I run nodetool compactionstats > > > I see the number of pending tasks keep going up steadily. > > > I tried to increase the compactionthroughput, by using > > > nodetool setcompactionthroughput > > > I even tried the extreme to set it to 0 to disable the throttling. > > > I checked iostats and we have SSD for data, the disk util is less than 5% > which means it's not I/O bound, CPU is also less than 10% > > > We are using levelcompaction and in the process of migrating data. We have > 4500 writes per second and very few reads. We have about 70G data now and > will grow to 150G when the migration finishes. We only have one CF and > right now the number of SSTable is around 15000, write latency is still > under 0.1ms. > > > Anything needs to be concerned? Or anything I can do to reduce the number > of pending compaction? > > > Thanks. > -Wei > > > > > > > > > > > > > > -- > > Derek Williams > > > > > > > > -- > > Derek Williams > > > > -- Derek Williams
