The Ubuntu package is mostly just a drop-in of the official Nvidia
packages for Linux:

http://www.nvidia.com/object/unix.html

So yes, this is actually an Nvidia upstream problem.

I suspect that there is some sort of race condition in the provided
build scripts written by Nvidia, and they are only showing up
intermittently or under particular system configurations/states, so
package reinstallation tends to work fine the second time.

Related: I see this comment in Nvidia's Makefile regarding the "new"
build system in Linux >= 2.6:

# The new approach currently has its own share of problems, some of which
# are architectural difficulties with KBUILD, others minor annoyances. For
# this reason, an improved version of the NVIDIA Makefile is available to
# those experiencing difficulties.

So it sounds like they admit to having architectural difficulties here.
I wonder where this "improved version" of the Makefile can be
obtained...

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https://bugs.launchpad.net/bugs/1268257

Title:
  nvidia-331-updates 331.38-0ubuntu3: nvidia-331-updates kernel module
  failed to build, with only error: "objdump: '... .tmp_nv.o': No such
  file"

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