I assume the rules I want to test go into mass-check.cf.
No, as per the file itself, only scores can go there.
Put the rules you want to test into your local.cf, or in with the spamassassin rules.
(note: if you run mass-check from a directory tree of an unpacked tarball, it will use ../rules/*.cf instead of /usr/share/spamassassin/*.cf, so you don't need to modify your site rules for this)
I've tried running mass-check followed by a directory path but that didn't seem to work. Do I need to build an mbox file rather than just a folder, or is there another way to run mass-check?
If you actualy read the top of the mass-check file itself, the command line parameters are documented in the comments at the top.
It's a bit sparse documentation wise, but the information you need should be there.
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