Re: [OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-03-07 Thread Gilles Gouaillardet
Jun, a patch is available at https://github.com/ggouaillardet/ompi-release/commit/f277beace9fbe8dd71f733602b5d4b0344d77a29.patch this is not a bulletproof one, but it does fix your problem. in this case, MPI_Ineighbor_alltoallw is invoked with sendbuf == recvbuf, and internally, libnbc consid

Re: [OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-03-07 Thread Jun Kudo
Giles, Thanks for the small bug fix. It helped clear up that test case but I'm again running into another segmentation fault on a more complicated problem. I've attached another 'working' example. This time I am using the MPI_Ineighbor_alltoallw on a triangular topology; node 0 communicates bi-

Re: [OMPI users] MPI_INIT gets stuck

2016-03-07 Thread Marco Atzeri
On 07/03/2016 18:58, Marco Lubosch wrote: Thanks Marco, I reinstalled Cygwin and OMPI like 10 times. I had an issues with gcc(mingw) because it was preinstalled under windows. I then had to remove it and reinstall gcc under cygwin and got it working but as I said only copiling plain C code with

Re: [OMPI users] MPI_INIT gets stuck

2016-03-07 Thread Marco Lubosch
Thanks Marco, I reinstalled Cygwin and OMPI like 10 times. I had an issues with gcc(mingw) because it was preinstalled under windows. I then had to remove it and reinstall gcc under cygwin and got it working but as I said only copiling plain C code with "mpicc". I also disabled Windows Firewa

Re: [OMPI users] openmpi bug on mac os 10.11.3 ?

2016-03-07 Thread Nathan Hjelm
Just want to point you you do not want to #include "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/machine/types.h" instead #include If you want to use a different OS X SDK use -isysroot. -Nathan On Sat, Mar 05, 2016 at 09:38

Re: [OMPI users] MPI_INIT gets stuck

2016-03-07 Thread Marco Atzeri
On 06/03/2016 10:06, Marco Lubosch wrote: Hello guys, I try to do the first steps with Open MPI and I finally got it work on Cygwin64(Windows 7 64bit). I am able to compile plain C code without any issues via "mpicc ..." but when I try to initialize MPI the program is getting stuck within "MPI

Re: [OMPI users] Troubles with linking C++ standard library with openmpi 1.10

2016-03-07 Thread Jordan Willis
Thanks Giles, Looks like it works with excluding VT. I was using g++ —version 4.9 btw. Thank you, Jordan > On Mar 6, 2016, at 9:05 PM, Gilles Gouaillardet wrote: > > Jordan, > > do you really need vt ? > if no, a trivial workaround is to > configure --disable-vt ... > > what is your configu

Re: [OMPI users] Troubles with linking C++ standard library with openmpi 1.10

2016-03-07 Thread Gilles Gouaillardet
Jordan, do you really need vt ? if no, a trivial workaround is to configure --disable-vt ... what is your configure command line ? assuming g++ is your c++ compiler, what does g++ --version says ? Cheers, Gilles On 3/7/2016 1:32 PM, Jordan Willis wrote: Hi everyone, I have tried everythi