Thanks Giles, Looks like it works with excluding VT. I was using g++ —version 4.9 btw.
Thank you, Jordan > On Mar 6, 2016, at 9:05 PM, Gilles Gouaillardet <gil...@rist.or.jp> wrote: > > Jordan, > > do you really need vt ? > if no, a trivial workaround is to > configure --disable-vt ... > > what is your configure command line ? > assuming g++ is your c++ compiler, what does g++ --version says ? > > Cheers, > > Gilles > > > > On 3/7/2016 1:32 PM, Jordan Willis wrote: >> >> Hi everyone, >> >> I have tried everything to compile openmpi. It used to compile on my system, >> and I’m not sure what has changed in my c++ libraries to get this error. I >> get the following when trying to compile >> contrib/vt/vt/extlib/otf/tools/otfprofile >> >> make[8]: Entering directory >> `/dnas/apps/openmpi/openmpi-1.10.2/ompi/contrib/vt/vt/extlib/otf/tools/otfprofile' >> CXXLD otfprofile >> otfprofile-collect_data.o: In function `std::string::_M_check(unsigned long, >> char const*) const': >> /usr/include/c++/4.9/bits/basic_string.h:324: undefined reference to >> `std::__throw_out_of_range_fmt(char const*, ...)' >> otfprofile-create_latex.o: In function `std::string::_M_check(unsigned long, >> char const*) const': >> /usr/include/c++/4.9/bits/basic_string.h:324: undefined reference to >> `std::__throw_out_of_range_fmt(char const*, ...)' >> /usr/include/c++/4.9/bits/basic_string.h:324: undefined reference to >> `std::__throw_out_of_range_fmt(char const*, ...)' >> otfprofile-create_filter.o: In function `std::string::_M_check(unsigned >> long, char const*) const': >> /usr/include/c++/4.9/bits/basic_string.h:324: undefined reference to >> `std::__throw_out_of_range_fmt(char const*, ...)' >> otfprofile-create_filter.o: In function `std::vector<CTree<std::string>*, >> std::allocator<CTree<std::string>*> >::_M_range_check(unsigned long) const': >> /usr/include/c++/4.9/bits/stl_vector.h:803: undefined reference to >> `std::__throw_out_of_range_fmt(char const*, ...)' >> otfprofile-create_filter.o:/usr/include/c++/4.9/bits/stl_vector.h:803: more >> undefined references to `std::__throw_out_of_range_fmt(char const*, ...)' >> follow >> collect2: error: ld returned 1 exit status >> make[8]: *** [otfprofile] Error 1 >> >> If I look online, it may be due to trying to use gcc-4.8 functions in an 4.9 >> compiler. So I have tried switching to 4.8 just to check. They also say you >> may have to update your toolchain to force GCC-4.9 although I’m not sure I >> know how to do this. I have also tried compiling openmpi1.8 (last stable) >> and get the same error. I have also reinstalled all my packages using >> aptitude. >> >> The reason I’m trying to do a custom compile is because I’m trying to build >> the pmi libraries that come with SLURM, although I get the same error on a >> basic configuration. >> >> I’m on ubuntu server 14.04. I think I have exhausted my troubleshooting >> ideas and I’m reaching out to you. My configuration log can be sent at >> request, but the attachment causes my message to get bounced from the list. >> >> Thanks so much, >> Jordan >> >> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org <mailto:us...@open-mpi.org> >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users >> <http://www.open-mpi.org/mailman/listinfo.cgi/users> >> Link to this post: >> http://www.open-mpi.org/community/lists/users/2016/03/28648.php >> <http://www.open-mpi.org/community/lists/users/2016/03/28648.php> > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/03/28649.php
