Just want to point you you do not want to #include "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/machine/types.h"
instead
#include <machine/types.h>
If you want to use a different OS X SDK use -isysroot.
-Nathan
On Sat, Mar 05, 2016 at 09:38:17PM +0100, Hans-Jürgen Greif wrote:
> Hello Jeff Squyres,
> I' m using: openmpi-1.10.2.tar.gz
> The file first.c:
> #include "mpi.h"
> #include <stdio.h>
> #include <stdlib.h>
> #include <string.h>
> //#include <linux/types.h>
> #include
>
> "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/machine/types.h"
> //using namespace std;
> int main(int argc, char **argv )
> {
> char text[20];
> int myrank, size, sender=0, adressat=1, tag=99;
> MPI_Status status;
> MPI_Init( & argc, & argv );
> MPI_Comm_rank(MPI_COMM_WORLD, & myrank);
> MPI_Comm_size(MPI_COMM_WORLD, & size);
> printf(" myrank = %d \n",myrank);
> printf(" size = %d \n", size);
> //printf("Hello, world! "
> // "from process %d of %d\n", myrank, size);
> if (size > 2 )
> {
> printf("Beispiel fu:r 2 Tasks \n");
> MPI_Finalize();
> exit(1);
> }
> if ( myrank == 0 )
> {
> strcpy(text, "Hallo zusammen");
> MPI_Send(text, strlen(text), MPI_CHAR, adressat, tag, MPI_COMM_WORLD);
> }
> else
> {
> MPI_Recv(text, 20, MPI_CHAR, sender, tag, MPI_COMM_WORLD, & status);
>
> printf("Task %d empfing: %s: \n", myrank, text);
> }
>
>
>
> MPI_Finalize();
> return 0;
> }
> is working, but it is much simpler. On opensuse 13.2 second runs fine.
> Test second.c on your machine. I cannot debug it.
> Regards,
> Hans-Juergen Greif
>
> Hans-Ju:rgen Greif
> hans_juergen.gr...@kabelbw.de
>
> Am 05.03.2016 um 16:54 schrieb Jeff Squyres (jsquyres)
> <jsquy...@cisco.com>:
> What version of Open MPI are you using?
>
> Can you send all the information listed here:
>
> https://www.open-mpi.org/community/help/
>
> On Mar 5, 2016, at 5:35 AM, Hans-Ju:rgen Greif
> <hans_juergen.gr...@kabelbw.de> wrote:
>
> Hello,
>
> on mac os 10.11.3 I have found an error:
>
> mpirun -np 2 valgrind ./second
> ==612== Memcheck, a memory error detector
> ==612== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et
> al.
> ==612== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright
> info
> ==612== Command: ./second
> ==612==
> ==611== Memcheck, a memory error detector
> ==611== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et
> al.
> ==611== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright
> info
> ==611== Command: ./second
> ==611==
> --612-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option
> --611-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option
> --612-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 2 times)
> --611-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 2 times)
> --611-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 4 times)
> --612-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 4 times)
> --611-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 8 times)
> --612-- UNKNOWN mach_msg unhandled MACH_SEND_TRAILER option (repeated
> 8 times)
> ==612== Conditional jump or move depends on uninitialised value(s)
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x100000BED: main (second.c:39)
> ==611==
> ==612== at 0x100000D1C: main (second.c:60)
> ==612==
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x100060781: MPI_Win_post (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x100413E98: __ultoa (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10041136C: __vfprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1004396C8: __v2printf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10040EF51: _vasprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1001C379E: opal_show_help_vstring (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100128231: orte_show_help (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10002069E: backend_fatal (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000203EC: ompi_mpi_errors_are_fatal_comm_handler (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000201BD: ompi_errhandler_invoke (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x100413F06: __ultoa (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10041136C: __vfprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1004396C8: __v2printf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10040EF51: _vasprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1001C379E: opal_show_help_vstring (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100128231: orte_show_help (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10002069E: backend_fatal (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000203EC: ompi_mpi_errors_are_fatal_comm_handler (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000201BD: ompi_errhandler_invoke (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x100413F71: __ultoa (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10041136C: __vfprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1004396C8: __v2printf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x10040EF51: _vasprintf (in
> /usr/lib/system/libsystem_c.dylib)
> ==611== by 0x1001C379E: opal_show_help_vstring (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100128231: orte_show_help (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10002069E: backend_fatal (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000203EC: ompi_mpi_errors_are_fatal_comm_handler (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000201BD: ompi_errhandler_invoke (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> ==611== Conditional jump or move depends on uninitialised value(s)
> ==611== at 0x10000B359: strlen (vg_replace_strmem.c:470)
> ==611== by 0x10019922D: opal_dss_pack_string (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100198CFD: opal_dss_pack (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100128633: orte_show_help_norender (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x100128249: orte_show_help (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10002069E: backend_fatal (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000203EC: ompi_mpi_errors_are_fatal_comm_handler (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000201BD: ompi_errhandler_invoke (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> ==611== Thread 2:
> ==611== Syscall param write(buf) points to uninitialised byte(s)
> ==611== at 0x10051C9FE: write (in
> /usr/lib/system/libsystem_kernel.dylib)
> ==611== by 0x1012C9926: send_bytes (in
> /usr/local/openmpi/lib/openmpi/mca_oob_tcp.so)
> ==611== by 0x1012C916F: mca_oob_tcp_send_handler (in
> /usr/local/openmpi/lib/openmpi/mca_oob_tcp.so)
> ==611== by 0x1001CDC10: opal_libevent2021_event_base_loop (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x10013BC6C: orte_progress_thread_engine (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10066CC12: _pthread_body (in
> /usr/lib/system/libsystem_pthread.dylib)
> ==611== by 0x10066CB8F: _pthread_start (in
> /usr/lib/system/libsystem_pthread.dylib)
> ==611== by 0x10066A374: thread_start (in
> /usr/lib/system/libsystem_pthread.dylib)
> ==611== Address 0x101c7f7cd is 157 bytes inside a block of size 512
> alloc'd
> ==611== at 0x100009D5A: realloc (vg_replace_malloc.c:789)
> ==611== by 0x100197E32: opal_dss_buffer_extend (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x10019926B: opal_dss_pack_string (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100198CFD: opal_dss_pack (in
> /usr/local/openmpi/lib/libopen-pal.13.dylib)
> ==611== by 0x100128633: orte_show_help_norender (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x100128249: orte_show_help (in
> /usr/local/openmpi/lib/libopen-rte.12.dylib)
> ==611== by 0x10002069E: backend_fatal (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000203EC: ompi_mpi_errors_are_fatal_comm_handler (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x1000201BD: ompi_errhandler_invoke (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==611== by 0x100000C69: main (second.c:43)
> ==611==
> [alpha:611] *** An error occurred in MPI_Win_post
> [alpha:611] *** reported by process [122543980675073,1095216660480]
> [alpha:611] *** on communicator MPI_COMM_WORLD
> [alpha:611] *** MPI_ERR_WIN: invalid window
> [alpha:611] *** MPI_ERRORS_ARE_FATAL (processes in this communicator
> will now abort,
> [alpha:611] *** and potentially your MPI job)
> --611:0:schedule VG_(sema_down): read returned -4
> ==611==
> ==611== HEAP SUMMARY:
> ==611== in use at exit: 2,644,595 bytes in 7,919 blocks
> ==611== total heap usage: 13,035 allocs, 5,116 frees, 3,399,345
> bytes allocated
> ==611==
> ==611== LEAK SUMMARY:
> ==611== definitely lost: 680 bytes in 16 blocks
> ==611== indirectly lost: 24 bytes in 1 blocks
> ==611== possibly lost: 0 bytes in 0 blocks
> ==611== still reachable: 2,621,733 bytes in 7,710 blocks
> ==611== suppressed: 22,158 bytes in 192 blocks
> ==611== Rerun with --leak-check=full to see details of leaked memory
> ==611==
> ==611== For counts of detected and suppressed errors, rerun with: -v
> ==611== Use --track-origins=yes to see where uninitialised values come
> from
> ==611== ERROR SUMMARY: 75 errors from 7 contexts (suppressed: 0 from
> 0)
> ==612==
> ==612== Process terminating with default action of signal 15 (SIGTERM)
> ==612== at 0x10002E490: ompi_request_default_wait_all (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x101446397:
> ompi_coll_tuned_allreduce_intra_recursivedoubling (in
> /usr/local/openmpi/lib/openmpi/mca_coll_tuned.so)
> ==612== by 0x10001CA18: ompi_comm_allreduce_intra (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x10001C829: ompi_comm_nextcid (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x10001B55E: ompi_comm_dup_with_info (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x10140B8B1: component_select (in
> /usr/local/openmpi/lib/openmpi/mca_osc_pt2pt.so)
> ==612== by 0x100032FE5: ompi_win_create (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x10005F1FF: MPI_Win_create (in
> /usr/local/openmpi/lib/libmpi.12.dylib)
> ==612== by 0x100000D75: main (second.c:62)
> ==612==
> ==612== HEAP SUMMARY:
> ==612== in use at exit: 2,589,509 bytes in 7,918 blocks
> ==612== total heap usage: 12,962 allocs, 5,044 frees, 3,252,656
> bytes allocated
> ==612==
> ==612== LEAK SUMMARY:
> ==612== definitely lost: 210,011 bytes in 92 blocks
> ==612== indirectly lost: 279,210 bytes in 6,023 blocks
> ==612== possibly lost: 53,392 bytes in 9 blocks
> ==612== still reachable: 2,024,738 bytes in 1,602 blocks
> ==612== suppressed: 22,158 bytes in 192 blocks
> ==612== Rerun with --leak-check=full to see details of leaked memory
> ==612==
> ==612== For counts of detected and suppressed errors, rerun with: -v
> ==612== Use --track-origins=yes to see where uninitialised values come
> from
> ==612== ERROR SUMMARY: 14 errors from 1 contexts (suppressed: 0 from
> 0)
>
> The program second.c runs well on opensuse 13.3.
>
> <second.c>
>
> Hans-Ju:rgen Greif
>
> hans_juergen.gr...@kabelbw.de
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2016/03/28638.php
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2016/03/28640.php
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2016/03/28642.php
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