Re: [OMPI users] Running program on a cluster

2014-09-24 Thread Ralph Castain
No, it doesn't matter at all for OMPI - any order is fine. The issue I see is that your mpiexec isn't the OMPI one, but is from someone else. I have no idea whose mpiexec you are using On Sep 24, 2014, at 6:38 PM, XingFENG wrote: > I have found the solution. The command mpirun -machinefile ./

Re: [OMPI users] Running program on a cluster

2014-09-24 Thread XingFENG
I have found the solution. The command *mpirun -machinefile ./my_hosts -n 3 ./testMPI* works. I think the order of arguments matters here. On Thu, Sep 25, 2014 at 11:02 AM, XingFENG wrote: > Hi all, > > I got problem with running program on a cluster. > I used the following command. *my_hosts* i

[OMPI users] Running program on a cluster

2014-09-24 Thread XingFENG
Hi all, I got problem with running program on a cluster. I used the following command. *my_hosts* is a file containing 3 hosts while *testMPI* is a very simple MPI program. == *mpirun -np 2 --hostfile ./my_hosts ./testMPImpirun -np 2 --machinefile ./my_ho

Re: [OMPI users] Strange affinity messages with 1.8 and torque 5

2014-09-24 Thread Allin Cottrell
On Wed, 24 Sep 2014, Ralph Castain wrote: As I said, we removed the warning starting in 1.8.3 On Sep 24, 2014, at 1:23 PM, Brock Palen wrote: So very hetero, I did some testing and I couldn't make it happen below 32 cores. Not sure if this the real issue [...] Just to amplify Ralph's resp

Re: [OMPI users] Strange affinity messages with 1.8 and torque 5

2014-09-24 Thread Ralph Castain
As I said, we removed the warning starting in 1.8.3 On Sep 24, 2014, at 1:23 PM, Brock Palen wrote: > So very hetero, I did some testing and I couldn't make it happen below 32 > cores. Not sure if this the real issue or if it requires a specific layout: > > [brockp@nyx5512 ~]$ cat $PBS_NODEFI

Re: [OMPI users] Strange affinity messages with 1.8 and torque 5

2014-09-24 Thread Brock Palen
So very hetero, I did some testing and I couldn't make it happen below 32 cores. Not sure if this the real issue or if it requires a specific layout: [brockp@nyx5512 ~]$ cat $PBS_NODEFILE | sort | uniq -c 1 nyx5512 1 nyx5515 1 nyx5518 1 nyx5523 1 nyx5527 2 nyx

[OMPI users] mpi_file_read and arrays of custom datatypes

2014-09-24 Thread Au Eelis
Hi! I want to convert the input/output of my program to MPI-IO routines. To write the same data, as is written in the already implement textmode routines, I need a custom datatype consisting of several integers and reals. While investigating the functionality, I created a module, which cares for