Thanks for all the suggestions. I'm able to get it to work now using the
simpler config line suggested. I did not fully explain my setup but it
turns out due to a mount error my machine was not seeing the new files in
the rebuilt openmpi directory which was remotely mounted, so I kept getting
the s
Le 07/12/2011 23:00, Rayson Ho a écrit :
> We are using hwloc-1.2.2 for topology binding in Open Grid
> Scheduler/Grid Engine 2011.11, and a user is encountering similar
> issues:
>
> http://gridengine.org/pipermail/users/2011-December/002126.html
>
> In Open MPI, there is the configure switch "--w
We are using hwloc-1.2.2 for topology binding in Open Grid
Scheduler/Grid Engine 2011.11, and a user is encountering similar
issues:
http://gridengine.org/pipermail/users/2011-December/002126.html
In Open MPI, there is the configure switch "--without-libnuma" to turn
libnuma off. But since Open M
--Original Message--
From: Gustavo Correa
Sender: users-boun...@open-mpi.org
To: Open MPI Users
ReplyTo: Open MPI Users
Sent: Dec 7, 2011 1:10 PM
Subject: Re: [OMPI users] orte_ess_base_select failed
Hi John Doe
I would keep it very simple, particularly if you are just starting with MPI
On Dec 7, 2011, at 10:45 AM, John Doe wrote:
> Ok. That did help a bit. I now see that the /opt/ompi/gnu/1.4.4/lib/openmpi/
> directory has .so files as well as the .la files. Unfortunately I still get
> the same error when I run i.e it complains about missing files in that
> directory even t
Did you do a 'make distclean' before you started anew?
On Dec 7, 2011, at 12:45 PM, John Doe wrote:
> Ok. That did help a bit. I now see that the /opt/ompi/gnu/1.4.4/lib/openmpi/
> directory has .so files as well as the .la files. Unfortunately I still get
> the same error when I run i.e it com
Hi John Doe
Set these environment variables in your .profile/.bashrc or .[t]cshrc file.
If you set them in the shell prompt, before you run the job, I am not sure they
will
propagate to the MPI processes, even if you are running in a standalone machine
[which apparently you are].
Ralph may clari
Hi John Doe
I would keep it very simple, particularly if you are just starting with MPI or
OpenMPI.
Why not this?
./configure --prefix=/opt/ompi/gnu/1.4.4
You may also point to the compilers CC, CXX, F77. FC, for C, C++, Fortran-77
and Fortran-90,
respectively , in case they are not in stand
Ok. That did help a bit. I now see that the
/opt/ompi/gnu/1.4.4/lib/openmpi/ directory has .so files as well as the .la
files. Unfortunately I still get the same error when I run i.e it complains
about missing files in that directory even though those files are present
with an .so or .la extension
Hi Ralph,
I may have been a little promiscous in my use of build flags. My initial
configure line was much simpler then I kept throwing in flags when it
wouldn't run. I'll try to build it again with the your config line and see
if that resolves the issue.
Sam
On Wed, Dec 7, 2011 at 11:11 AM, Ra
I don't understand your configure line - why did you give an argument to
enable-shared?? That option doesn't take an argument, and may be causing the
confusion. Also, enable-debug by default turns off optimization as otherwise
the optimizer removes all debug symbols.
If you want a debug version
Hi Gustavo,
I do have /opt/ompi/gnu/1.4.4/lib in my LD_LIBRARY_PATH and the bin
directory in my path as well but that didn't seem to help.
Sam
On Tue, Dec 6, 2011 at 5:18 PM, Gustavo Correa wrote:
> Hi John Doe
>
> What you need to add to LD_LIBRARY_PATH is /opt/ompi/gnu/1.4.4/lib
> [note 'lib
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