Hi John Doe I would keep it very simple, particularly if you are just starting with MPI or OpenMPI. Why not this?
./configure --prefix=/opt/ompi/gnu/1.4.4 You may also point to the compilers CC, CXX, F77. FC, for C, C++, Fortran-77 and Fortran-90, respectively , in case they are not in standard location. Do a 'make distclean' before you start, to cleanup any old mess. Once you get it working, you can add other flags. However, I would add only those that you may really need. I hope this helps, Gary Cooper On Dec 7, 2011, at 12:19 PM, John Doe wrote: > Hi Ralph, > > I may have been a little promiscous in my use of build flags. My initial > configure line was much simpler then I kept throwing in flags when it > wouldn't run. I'll try to build it again with the your config line and see if > that resolves the issue. > > Sam > > On Wed, Dec 7, 2011 at 11:11 AM, Ralph Castain <r...@open-mpi.org> wrote: > I don't understand your configure line - why did you give an argument to > enable-shared?? That option doesn't take an argument, and may be causing the > confusion. Also, enable-debug by default turns off optimization as otherwise > the optimizer removes all debug symbols. > > If you want a debug version, try just this: > > ./configure --prefix=/opt/ompi/gnu/1.4.4 --enable-debug > --with-valgrind=/opt/valgrind --enable-orterun-prefix-by-default > --enable-memchecker --enable-mem-profile > > You don't need --with-devel-headers unless you intend to write code that > directly drives the OMPI internals. > > > On Dec 7, 2011, at 10:00 AM, John Doe wrote: > >> Hi Gustavo, >> >> I do have /opt/ompi/gnu/1.4.4/lib in my LD_LIBRARY_PATH and the bin >> directory in my path as well but that didn't seem to help. >> >> Sam >> >> On Tue, Dec 6, 2011 at 5:18 PM, Gustavo Correa <g...@ldeo.columbia.edu> >> wrote: >> Hi John Doe >> >> What you need to add to LD_LIBRARY_PATH is /opt/ompi/gnu/1.4.4/lib >> [note 'lib' at the end]. >> Your email seems to say that you added /opt/ompi/gnu/1.4.4/lib/openmpi >> instead, if I understood it right. >> And to your PATH you need to add the corresponding 'bin' directory: >> /opt/ompi/gnu/1.4.4/bin. >> The rule here is your installation prefix /opt/ompi/gnu/1.4.4/ >> with 'lib' or 'bin' at the end. >> >> I hope this helps, >> Frank Capra >> >> On Dec 6, 2011, at 5:54 PM, John Doe wrote: >> >> > I recently built and installed openmpi on my 64 bit linux machine running >> > centOS 6. >> > However whenever I try mpirun I get the error message: >> > >> > [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c >> > at line 125 >> > orte_ess_base_select failed >> > >> > Actually here's the full error transcript: >> > ==================================================================================================== >> > >> mpiexec -n 4 object/a.out >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_paffinity_linux: file not found >> > (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_carto_auto_detect: file not found >> > (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_carto_file: file not found (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_env: file not found (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_hnp: file not found (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_singleton: file not found (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_slurm: file not found (ignored) >> > [ellipse:01480] mca: base: component_find: unable to open >> > /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_tool: file not found (ignored) >> > [ellipse:01480] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> > runtime/orte_init.c at line 125 >> > -------------------------------------------------------------------------- >> > It looks like orte_init failed for some reason; your parallel process is >> > likely to abort. There are many reasons that a parallel process can >> > fail during orte_init; some of which are due to configuration or >> > environment problems. This failure appears to be an internal failure; >> > here's some additional information (which may only be relevant to an >> > Open MPI developer): >> > >> > orte_ess_base_select failed >> > --> Returned value Not found (-13) instead of ORTE_SUCCESS >> > -------------------------------------------------------------------------- >> > >> > ============================================================================================================= >> > >> > >> > Here are the configure options I used to build openmpi: >> > ./configure --prefix=/opt/ompi/gnu/1.4.4 CC=gcc -m64 CXX=g++ -m64 >> > FC=gfortran -m64 F77=gfortran -m64 CFLAGS=-O2 -g CXXFLAGS=-O2 -g >> > FCFLAGS=-O2 -g FFLAGS=-O2 -g --enable-debug --enable-shared=gcc >> > --with-valgrind=/opt/valgrind --with-devel-headers --enable-mem-profile >> > --enable-orterun-prefix-by-default --enable-memchecker >> > >> > Does anyone have any idea what these errors are. I tried recompiling with >> > the --enable-orterun-prefix-by-default flag. Also while those files e.g >> > mca_ess_tool are not found, the static versions e.g mca_ess_tool.a and >> > mca_ess_tool.la exist in the /opt/ompi/gnu/1.4.4/lib/openmpi directory. >> > I've also tried adding that directory to my LD_LIBRARY_PATH but still get >> > the same error. Help would be much appreciated. >> > >> > Thanks, >> > Sam >> > _______________________________________________ >> > users mailing list >> > us...@open-mpi.org >> > http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
