Ok. That did help a bit. I now see that the /opt/ompi/gnu/1.4.4/lib/openmpi/ directory has .so files as well as the .la files. Unfortunately I still get the same error when I run i.e it complains about missing files in that directory even though those files are present with an .so or .la extension (but not without): mca_parfinity_linux, mca_carto_auto_detect, mca_carto_file, mca_ess_env, mca_ess_hnp, mca_ess_singleton, mca_ess_slurm, mca_ess_tool
Can anyone help with what these files are and how I can get my compile to generate them (without extensions)? Thanks, Sam On Wed, Dec 7, 2011 at 11:19 AM, John Doe <javadevelope...@gmail.com> wrote: > Hi Ralph, > > I may have been a little promiscous in my use of build flags. My initial > configure line was much simpler then I kept throwing in flags when it > wouldn't run. I'll try to build it again with the your config line and see > if that resolves the issue. > > Sam > > > On Wed, Dec 7, 2011 at 11:11 AM, Ralph Castain <r...@open-mpi.org> wrote: > >> I don't understand your configure line - why did you give an argument to >> enable-shared?? That option doesn't take an argument, and may be causing >> the confusion. Also, enable-debug by default turns off optimization as >> otherwise the optimizer removes all debug symbols. >> >> If you want a debug version, try just this: >> >> ./configure --prefix=/opt/ompi/gnu/1.4.4 --enable-debug >> --with-valgrind=/opt/valgrind --enable-orterun-prefix-by-default >> --enable-memchecker --enable-mem-profile >> >> You don't need --with-devel-headers unless you intend to write code that >> directly drives the OMPI internals. >> >> >> On Dec 7, 2011, at 10:00 AM, John Doe wrote: >> >> Hi Gustavo, >> >> I do have /opt/ompi/gnu/1.4.4/lib in my LD_LIBRARY_PATH and the bin >> directory in my path as well but that didn't seem to help. >> >> Sam >> >> On Tue, Dec 6, 2011 at 5:18 PM, Gustavo Correa <g...@ldeo.columbia.edu>wrote: >> >>> Hi John Doe >>> >>> What you need to add to LD_LIBRARY_PATH is /opt/ompi/gnu/1.4.4/lib >>> [note 'lib' at the end]. >>> Your email seems to say that you added /opt/ompi/gnu/1.4.4/lib/openmpi >>> instead, if I understood it right. >>> And to your PATH you need to add the corresponding 'bin' directory: >>> /opt/ompi/gnu/1.4.4/bin. >>> The rule here is your installation prefix /opt/ompi/gnu/1.4.4/ >>> with 'lib' or 'bin' at the end. >>> >>> I hope this helps, >>> Frank Capra >>> >>> On Dec 6, 2011, at 5:54 PM, John Doe wrote: >>> >>> > I recently built and installed openmpi on my 64 bit linux machine >>> running centOS 6. >>> > However whenever I try mpirun I get the error message: >>> > >>> > [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >>> runtime/orte_init.c at line 125 >>> > orte_ess_base_select failed >>> > >>> > Actually here's the full error transcript: >>> > >>> ==================================================================================================== >>> > >> mpiexec -n 4 object/a.out >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_paffinity_linux: file not found >>> (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_carto_auto_detect: file not found >>> (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_carto_file: file not found (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_env: file not found (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_hnp: file not found (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_singleton: file not found (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_slurm: file not found (ignored) >>> > [ellipse:01480] mca: base: component_find: unable to open >>> /opt/ompi/gnu/1.4.4/lib/openmpi/mca_ess_tool: file not found (ignored) >>> > [ellipse:01480] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >>> runtime/orte_init.c at line 125 >>> > >>> -------------------------------------------------------------------------- >>> > It looks like orte_init failed for some reason; your parallel process >>> is >>> > likely to abort. There are many reasons that a parallel process can >>> > fail during orte_init; some of which are due to configuration or >>> > environment problems. This failure appears to be an internal failure; >>> > here's some additional information (which may only be relevant to an >>> > Open MPI developer): >>> > >>> > orte_ess_base_select failed >>> > --> Returned value Not found (-13) instead of ORTE_SUCCESS >>> > >>> -------------------------------------------------------------------------- >>> > >>> > >>> ============================================================================================================= >>> > >>> > >>> > Here are the configure options I used to build openmpi: >>> > ./configure --prefix=/opt/ompi/gnu/1.4.4 CC=gcc -m64 CXX=g++ -m64 >>> FC=gfortran -m64 F77=gfortran -m64 CFLAGS=-O2 -g CXXFLAGS=-O2 -g >>> FCFLAGS=-O2 -g FFLAGS=-O2 -g --enable-debug --enable-shared=gcc >>> --with-valgrind=/opt/valgrind --with-devel-headers --enable-mem-profile >>> --enable-orterun-prefix-by-default --enable-memchecker >>> > >>> > Does anyone have any idea what these errors are. I tried recompiling >>> with the --enable-orterun-prefix-by-default flag. Also while those files >>> e.g mca_ess_tool are not found, the static versions e.g mca_ess_tool.a and >>> mca_ess_tool.la exist in the /opt/ompi/gnu/1.4.4/lib/openmpi directory. >>> I've also tried adding that directory to my LD_LIBRARY_PATH but still get >>> the same error. Help would be much appreciated. >>> > >>> > Thanks, >>> > Sam >>> > _______________________________________________ >>> > users mailing list >>> > us...@open-mpi.org >>> > http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> > >
