n also have a look at the `shared-mime-info` package for another
way to associate the `.pages` file suffix to the
`application/vnd.apple.pages` media type.
Have a nice day,
Charles Plessy
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Fixed in version 1.1.21-3
** Changed in: perlprimer (Ubuntu)
Status: Confirmed => Fix Released
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Title:
perlprimer crashes on start: Can't
Hello,
fastqc is now at the latest version in Utopic and Vivid, so I close this
report.
Have a nice day,
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** Changed in: fastqc (Ubuntu)
Status: New => Fix Released
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Closing this bug as the media type application/vnd.debian.binary-package
is being deployed.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Thanks Scott ! This is very timely as Debian's cloud-init package just
got http://bugs.debian.org/750314 filed because the package could not be
rebuilt in a chroot.
Do you by chance plan an upstream release of cloud-init in the near
future ? If not, I will apply revision 976 as a patch to the De
** Changed in: mime-support (Ubuntu)
Status: Incomplete => Fix Released
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Title:
run-mailcap does not work on jpeg files
To manage notific
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Title:
package okular 4:4.9.2-0ubuntu1 failed to install/upgrade: subpro
Thanks for the update. Closing accordingly.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Title:
package mime-
?
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Title:
package mime-support 3.54ubuntu1 failed to install/upgrade: subprocess
installed
Dear Fehrat,
are you still affected by this bug ? If not, I will close it.
Have a nice week-end,
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Dear wdesmet,
thank you for your report. I suspect that the problem may rather be
that the JPEG file is corrupted. Have you tested with another JPEG
file, and have you confirmed that the p1000459.jpg file can be opened
with other programs ?
Have a nice day,
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Tsurumi
Closing in mime-support as /etc/mime.types contains application/visio
since 3.51-1.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing as it was solved in the libreoffice packages (which are where
the bug should have been reported).
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Closing as the attached file seems corrupted (impossible to decompress)
and for lack of activity.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing for lack of activity. Please feel free to reopen if you are
still affected by this bug.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Closing in mime-support as the bug was about Launchpad serving the wrong
media type.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing for lack of activity. Please feel free to reopen.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Title:
p
Closing as it is shared-mime-info, not mime-support, that provides the
media type ‘application-x-desktop’. Please feel free to re-open,
preferably on mime-support.
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing as it was fixed in https://bugs.launchpad.net/ubuntu/+bug/506702
** Changed in: mime-support (Ubuntu)
Status: Confirmed => Fix Released
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Closing as this bug was solved in
https://bugs.launchpad.net/ubuntu/+bug/506702
** Changed in: mime-support (Ubuntu)
Status: Triaged => Fix Released
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The problem is not there anymore in version 3.23~dfsg-2.
** Changed in: mummer (Ubuntu)
Status: New => Fix Released
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Title:
paths in the n
** Changed in: treeviewx (Ubuntu)
Status: New => Fix Released
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Title:
treeviewx crashes when opening a file
To manage notifications about
** Changed in: emboss-explorer (Ubuntu)
Status: New => Fix Released
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Title:
Emboss-explorer broken in 12.10
To manage notifications about
Hi Diane,
I am closing this bug as it looks like the support for 10.04 LTS has
expired except for server issues.
Have a nice weeke-end,
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** Changed in: staden-io-lib (Ubuntu)
Status: New => Fix Released
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Fixed in 2.4.1-13.
** Changed in: wise (Ubuntu)
Status: New => Fix Released
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Title:
wise depends on files in -doc to run
To manage notif
le running a package where I barely understand much of
what its main script seems to be capable of doing.
Apart from this, unless Ubuntu has diverged on the kernel hooks, it seems to me
that the package should be working fine on both Debian and Ubuntu.
Have a nice Sunday,
Charles
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Public bug reported:
Hi Scott,
this is http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=674237. Can
you add the following line in debian/cloud-init.postrm for the purge ?
rm -f /etc/apt/apt.conf.d/90cloud-init-pipelining
Have a nice day,
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** Affects: cloud-init (Ubuntu)
I
This was a bug in the antiword package, which seems to have been fixed
already. I am therefore closing this bug.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Hello,
this must be coming from another package, because /etc/mime.types does
not mention this extension nor this media type. Also it may have been
solved sicne. (I do not see the problem in shared-mime-info, for
example). I am therefore closing this bug.
Have a nice week-end,
-- Charles Plessy
procedures for vendor and personal trees are being
implemented with the update of RFC 4288[1], that states: "it should
rarely, if ever, be necessary to use unregistered types. Therefore, use
of types in the 'x.' tree is strongly discouraged."
Have a nice week-end,
-- Cha
Closing as it is fixed since 3.51-1.
** Changed in: mime-support (Ubuntu)
Status: New => Fix Released
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Title:
add application/json to /etc
Hello,
Maybe Wikipedia should be corrected instead of mime-support ? Some
packages like gdebi support both media types.
In the long-term, I think that we should migrate to something like
application/vnd.debian.binary-package.
Cheers,
-- Charles Plessy, Tsurumi, Kanagawa, Japan.
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Conversely, what can be corrected is the absence of programs that
declare that they handle application/x-debian-package. I see that for
instance "MimeType=application/x-deb;application/x-debian-package;" in
/usr/share/applications/gdebi.desktop.
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Precision: the change has been committed, but it will only be uploaded
to Debian unstable after the next stable release.
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** Bug watch added: Debian Bug tracker #688383
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688383
** Also
Thanks Wolfgang for the report !
I just tried on my Debian Sid, and emboss-explorer hangs because the
EMBOSS command 'wossname' hangs. Can you confirm it on Ubuntu, and
reassign the bug to emboss if it is the case ?
Have a nice Sunday,
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Debian Med packaging
Closing as next update will change the description in a way that removes
the non-breaking space (SeaView now works with Clustal Omega instead of
Custal W).
** Changed in: seaview (Ubuntu)
Status: New => Fix Released
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backport on Debian Med's PPA:
https://launchpad.net/~debian-med/+archive/ppa/+sourcepub/2512983
/+listing-archive-extra
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
** This bug has been marked a duplicate o
Marking invalid as I do not think that samtools will ever be updated in
Lucid.
** Changed in: samtools (Ubuntu)
Status: New => Invalid
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Titl
This is already fixed in our Subversion repository and will take effect
at the upload of debian-med 1.12.
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Debian Med packaging team
Tsurumi, Kanagawa, Japan
** Changed in: debian-med (Ubuntu)
Status: New => Fix Committed
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Public bug reported:
Dear MOTUs,
r-cran-qvalue is replaced by r-bioc-qvalue (as the upstream source moved
from CRAN to Bioconductor). You can delete r-cran-qvalue from Ubuntu.
Have a nice day,
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Debian Med packaging team
Tsurumi, Kanagawa, Japan
** Affects: r-cran-qvalue
I am not a Ubuntu user (I track the bugs in this package because I
maintain it in Debian, where it comes from), so I only have guesses...
For Lucid (LTS as well), I have not seen bugs in scientific packages
from the "multiverse" component being corrected, so I am not sure if
mafft will be updated
Hello,
mafft 6.850-1 is indeed broken. This is the bug #636634 in Debian.
I have just uploaded in Debian Med's PPA a backport of the current
version in Debian Wheezy.
https://launchpad.net/~debian-med/+archive/ppa/+sourcepub/2512983
/+listing-archive-extra
Have a nice day,
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** Bug watch added: Debian Bug tracker #636634
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=636634
** Also affects: mafft (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=636634
Importance: Unknown
Status: Unknown
** Changed in: mafft (Ubuntu)
Status: New =
Hello,
1.46+dfsg-5 was built using jdk16.xml. Can you confirm that it solved
your problem ?
Have a nice day,
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Tsurumi, Kanagawa, Japan
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causing trouble, so I will keep it to minimise the
delta with Ubuntu.
I am opening this bug in Launchpad to track the issue, in order to
remove the diversion if eventually ureadahead supports detecting
the presence of cloud-init.
Have a nice day,
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Tsurumi, Kanagawa, Ja
Dear Tristan,
I am marking this bug incomplete as long as there is not test data
available to reproduce it.
Do you think you can provide ?
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan.
** Changed in: seaview
Just for the record, here is the preseed file I use.
** Attachment added: "Preseed to start the network console."
https://bugs.launchpad.net/ubuntu/+source/partman-base/+bug/862903/+attachment/2734690/+files/ubuntu-small-preseed.txt
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bug in Partman, or do you think it should be reassigned
somewhere else ?
Have a nice day,
-- Charles Plessy, Tsurumi, Kanagawa, Japan.
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Title
** Changed in: seaview (Ubuntu)
Status: New => Fix Released
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Title:
package seaview (not installed) failed to install/upgrade: trying to
> But njplot is affected.
> /usr/share/app-install/icons/njplot.gif
This file belongs to the app-install-data package:
http://packages.ubuntu.com/precise/all/app-install-data/filelist
And yes, I agree that a screenshot does not make a nice icon :)
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Please remove njplot from the list of the packages affected by
LP#889889.
** Changed in: njplot (Ubuntu)
Status: New => Invalid
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Title:
Us
ed and was formatted as a ext2 filesystem on the
whole disk (/dev/sdb). It was booted accordingly with the aki-ec5df7ed
kernel and ‘root (hd0)’ in GRUB (see above blog post).
The Debian bug http://bugs.debian.org/637784 is probably related to
this.
Have a nice day,
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Tsurumi, Kanag
*** This bug is a duplicate of bug 857662 ***
https://bugs.launchpad.net/bugs/857662
Thanks a lot. I confirm that the problem is solved in the 28-Sep-2011
build of the oneiric installer.
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Console output for Squeezes d-i on EC2.
** Attachment added: "Console output for Squeezes d-i on EC2."
https://bugs.launchpad.net/ubuntu/+source/netcfg/+bug/853686/+attachment/2451503/+files/853686_squeeze.txt.gz
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Thanks a lot for the fast response, and sorry for the delay in my answer
(holidays). I attached a console output from Debian's and Ubuntu's
installers, that shows that indeed xen-netfront is needed and loaded
(“Initialising Xen virtual ethernet driver”) in Debian but not in
Ubuntu. I also attache
Console output diff between Squeezes and Oneirics d-i on EC2.
** Patch added: "Console output diff between Squeezes and Oneirics d-i on EC2."
https://bugs.launchpad.net/ubuntu/+source/netcfg/+bug/853686/+attachment/2451504/+files/853686_squeeze-oneiric.diff
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Console output for Oneirics d-i on EC2.
** Attachment added: "Console output for Oneirics d-i on EC2."
https://bugs.launchpad.net/ubuntu/+source/netcfg/+bug/853686/+attachment/2451502/+files/853686_oneiric.txt.gz
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. │
│ │
││
│ │
└───┘
Using the same approach with Debian Squeeze's installer, the network can
be autoconfigured successfully (via preseeding).
Have a nice day,
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Tsurumi, Kanagawa, Japan
** Affects: netcfg (Ubuntu)
Importance: Undecided
Status: New
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Dear Tristan,
SeaView was upgraded to version 4.3 in Oneiric. Do you think you could
try to reproduce the bug with that version ?
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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** Bug watch added: Debian Bug tracker #631249
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631249
** Also affects: t-coffee (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=631249
Importance: Unknown
Status: Unknown
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I am closing the bug, since it is fixed since Maverick. Before this, I
tagged it ‘lucid’ as a reminder that it is not fixed in the LTS. But I
do not know if it is the proper way to do…
** Tags added: lucid
** Changed in: r-cran-vcd (Ubuntu)
Status: New => Fix Released
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It looks like 2:20100720-1 built fine, so I will close this bug.
https://launchpad.net/ubuntu/+source/phyml/2:20100720-1
** Changed in: phyml (Ubuntu Oneiric)
Status: New => Fix Released
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Fixed in 2.2-3.
** Changed in: amap-align (Ubuntu Oneiric)
Status: New => Fix Released
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Title:
amap-align version 2.2-1 failed to build o
Corrected by Andreas in 1.2-1-2. Thak you for the patch.
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Tsurumi, Kanagawa, Japan
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Hi Wolfgang,
here in Yokohama things have settled down and life has returned to
normal.
In Ubuntu 11.04 (Natty Narwhal), you will find the latest EMBOSS
packages, properly tied with the EMBASSY packages. I have installed
Natty on a friend's computer recently, and on the EMBOSS side, thinks
looke
Fixed in 2.3-3
** Bug watch added: Debian Bug tracker #614432
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614432
** Also affects: njplot (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614432
Importance: Unknown
Status: Unknown
** Changed in: njplot (Ubuntu)
** Changed in: epcr (Ubuntu Oneiric)
Status: Fix Committed => Fix Released
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Title:
epcr version 2.3.12-1 failed to build on i386
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stall build-essential devscripts
dget -x
http://archive.ubuntu.com/ubuntu/pool/multiverse/e/embassy-phylip/embassy-phylip_3.69+20100721-3.dsc
cd embassy-phylip-3.69+20100721-3
sudo mk-build-deps -r -i
debuild -us -uc
cd ..
sudo dpkg -i embassy-phylip*deb
Cheers,
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Debian Med pack
Fixed, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625036
** Changed in: probcons (Ubuntu)
Status: New => Fix Released
** Bug watch added: Debian Bug tracker #625036
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625036
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** Changed in: dialign (Ubuntu)
Status: New => Fix Released
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Title:
dialign version 2.2.1-3 failed to build on i386
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ucid1,
as other packages like libbio-samtools-perl would not be buildable. I
may revert again if we start to backport libbio-samtools-perl 1.28-2 or
superior, or new packages like cufflinks.
Have a nice week-end,
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Debian Med packaging team
http://www.debian.org/devel/debia
Fixed in 2.3.12-2
http://packages.qa.debian.org/e/epcr/news/20110222T111720Z.html
** Bug watch added: Debian Bug tracker #614482
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614482
** Also affects: epcr (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614482
Importance:
** Changed in: last-align (Ubuntu)
Status: New => Fix Committed
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Title:
last-align version 146-1 failed to build on amd64 with GCC-4.6/onei
** Bug watch added: Debian Bug tracker #624990
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=624990
** Also affects: amap-align (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=624990
Importance: Unknown
Status: Unknown
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libbio-samtools-perl during the transition to Perl 5.12 that
currently takes place in Debian.)
In addition, we are preparing a package for Cufflinks. You can see its
development at the following URL.
http://git.debian.org/?p=debian-med/cufflinks.git
Have a nice day,
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Debian Med
Fixed in Debian (162-1)
** Bug watch added: Debian Bug tracker #625084
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625084
** Also affects: last-align (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625084
Importance: Unknown
Status: Unknown
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** Bug watch added: Debian Bug tracker #618057
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=618057
** Also affects: dialign (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=618057
Importance: Unknown
Status: Unknown
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fine with the version of the blast2 package.
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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SAMtools
developers for their recommendation.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Illkirch, France
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Dear Kris,
thank you very much for your report. This is already fixed in the Natty
Narwhal.
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
** Changed in: emboss (Ubuntu)
Status: New => Fix Relea
Hello,
the package was automatically synchronised with Debian since the
Maverick Meerkat.
Have a nice day,
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Tsurumi, Kanagawa, Japan
** Changed in: perlprimer (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.
Fixed since the Maverick Meerkat.
** Changed in: emboss (Ubuntu)
Status: Confirmed => Fix Released
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Dependency on c shell necessary?
https://bugs.launchpad.net/bugs/525662
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** Changed in: emboss (Ubuntu)
Status: New => Fix Released
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frestdist documentation should not be in emboss-doc
https://bugs.launchpad.net/bugs/526347
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Fixed in the Natty Narwhal.
** Changed in: emboss (Ubuntu)
Status: New => Fix Released
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restrict and remap segmentation faults - lucid version on karmic system
https://bugs.launchpad.net/bugs/526356
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remove bio-linux-seaview if possible.
Do you mind if I close this bug, or would you like to keep it open until
an update of Bio Linux eventually resolves the problem?
Have a nice day,
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Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
** Bug watch added: Debian Bug tracker #600997
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=600997
** Also affects: imagej via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=600997
Importance: Unknown
Status: Unknown
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imagej refuses to quit
https://bugs.launchpad.net/bugs
Hi,
it looks like imagej was synced to 1.44e-1 in the Natty Narwhal.
Have a nice day,
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Debian Med packaging team
Tsurumi, Kanagawa, Japan
** Changed in: imagej (Ubuntu)
Status: New => Fix Released
--
Please sync imagej (universe) 1.44e-1 from Debian unstable (m
is necessary
to comply with the Apache license 2.0.
- The lintian overrides and the README.Debian notice about rpath, while not
essential to Ubuntu, are probably better to be ignored than deleted.
Have a nice day,
--
Charles Plessy
Debian pkg-eucalyptus team
http://wiki.debian.org/pkg
** Bug watch added: Debian Bug tracker #591592
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=591592
** Also affects: xkbsel (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=591592
Importance: Unknown
Status: Unknown
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xkbsel install problem
https://bugs.launchpad
For the record, treetool was removed from the Debian unstable and
testing branches, and will therefore not be part of future releases.
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med/
Tsurumi, Kanagawa, Japan
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xview does not build correctly on amd64
Hi all,
For the record, the reason why Debian's clustalx has not migrated in
testing is only the lack of autobuilders for non-free packages. There is
no release-critical problem in clustalx 2.0.12-2.
Cheers,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debia
,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
em_pscan and em_cons not found for jemboss
https://bugs.launchpad.net/bugs/527019
You received this bug notification because you are a member of Ubuntu
Bugs, which is subscribed to
Dear Bela,
have you also updated the libajax6 and libnucleus6 packages? Please let
me know if that solves your problem, so that I tighten the dependency of
the EMBOSS packages on these libraries.
Cheers,
--
Charles Plessy
Debian Med packaging team
http:www.debian.org/devel/debian-med
Tsurumi
Dear Bela,
this is a very good point. Since the emboss binary package does not
contain C shell scripts, this dependency is not needed. I will remove in
the next package update (to upstream version 6.2.0), which I hope to do
soon.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
),
you will obtain a package that is installable on karmic.
Have a nice day
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
libfontconfig1 - high version in embassy-phylip
https://bugs.launchpad.net/bugs/526350
You received this bug
Hello everybody,
This is fixed in Lucid since version 1.43l-1, that depends on
openjdk-6-jre | java2-runtime.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--
ImageJ fails to run - /usr/share/imagej/jni/*: No such
Excellent! I added $(RM) moc_* to the clean target in debian/rules and
the package builds fine on Lucid:
https://launchpad.net/~plessy/+archive/plessy/+build/1472225
I will update the Debian package soon.
Have a nice day,
--
Charles
--
Package heavily out of date
https://bugs.launchpad.net/b
Hi Stunts and Fabrice,
Indeed, libqt4-dev and other packages in Lucid are already in version
4.6 and clustalx does not like this. I confirmed in a PPA that clustalx
fails to build currently in Lucid
(https://launchpad.net/~plessy/+archive/plessy/+build/143).
About the patch (there is only one
Dear all,
This is actually the normal behaviour for Debian Pure Blends
metapackages, to suggest packages that are not yet existing. See:
http://blends.alioth.debian.org/blends/ch-
technology.en.html#s-metapackages
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http
Dear Stunts,
I just updated the clustalx package in Debian. You can contact MOTUs to
request a sync.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian/med
Tsurumi, Kanagawa, Japan.
--
Package heavily out of date
https://bugs.launchpad.net/bugs
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