>From the log:
./configure --enable-system-site-packagesls (SIC!)
## Checking whether SageMath should install SPKG scipy... ##
## -- ##
configure:90867: checking whether any of openblas is installed as or
will be installed as SPKG
configure:908
Ross,
You use a weird Python, /opt/sage/bin/python3
as is seen in the log:
[spkg-install] full command: /opt/sage/bin/python3 -c '
Is this the one you really must use?
If not, make sure that /opt/sage/bin/ is not in your PATH.
Use a system-wide Python3.12 instead.
Dima
On Tue, Sep 24, 20
On Tuesday, September 24, 2024 at 3:19:07 PM UTC-7 dim...@gmail.com wrote:
>From the log:
./configure --enable-system-site-packagesls (SIC!)
## Checking whether SageMath should install SPKG scipy... ##
## -- ##
configure:90867: checking
Though Sage officially supports python 3.9 to python 3.12, in my
experience, python 3.9 is "too old" and python 3.12 is somewhat "too new",
in the sense that packages on which sage depends on may not work well with
them.
So I suggest to try
./configure --with-python=PYTHON3
where PYTHON3 is t
Thank you, Dima and Kwankyu, for your suggestions.
I tried
make distclean
source .homebrew-build-env
./configure --with-python=/usr/local/bin/python3.10
make
Now kiwisolver-1.4.5 cannot be installed. See attached log file.
Best wishes,
Anne
On Tuesday, September 24, 2024 at 4:57:42 PM UTC-7 K
On Tue, Sep 24, 2024 at 11:32 PM Anne Schilling
wrote:
>
> Ok, sorry, here is the result after
>
> make distclean
> source .homebrew-build-env
> ./bootstrap
> ./configure --enable-system-site-packages
Well, with scipy in Homebrew you need Python from Homebrew, the Python
into which site-packages
Is Xcode command line tools up to date? If not, do
xcode-select --install
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It looks like Xcode command line tools are up to date:
MacBook-Pro-3:~ anne$ xcode-select --install
xcode-select: note: Command line tools are already installed. Use "Software
Update" in System Settings or the softwareupdate command line interface to
install updates
When I check on Software Upd
from your scipy log:
[spkg-install] Library m found: YES
[spkg-install]
[spkg-install] ../meson.build:80:0: ERROR: Compiler gfortran cannot
compile programs.
[spkg-install]
[spkg-install] A full log can be found at
/Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.
Hi Kwankyu,
Here are the logs for MacOS 15.0.
Best wishes,
Anne
On Tuesday, September 24, 2024 at 2:24:39 AM UTC-7 Kwankyu Lee wrote:
> Uploading the logs of the failed packages
>
> /Applications/sage/logs/pkgs/ipykernel-6.27.1.log
> /Applications/sage/logs/pkgs/scipy-1.12.0.log
>
> would help
On Tue, Sep 24, 2024 at 4:38 AM Kwankyu Lee wrote:
> It is unusual to pick "/home/username/.sage/sage" as the sage root directory.
> We recommend "/home/username/sage/sage".
Indeed, ~/.sage/ has a special purpose in Sage, for storing various
temporary things, configs, etc.
Better avoid this doub
Hi Anne,
Please post the log file for this:
package: ipykernel-6.27.1
last build time: Sep 23 23:48
log file:/Users/anne/sage/sage/logs/pkgs/ipykernel-6.27.1.log
On Tue, Sep 24, 2024 at 8:10 AM Anne Schilling
wrote:
>
>
> Dear All,
>
> To add further confusion to this issue,
Dear All,
To add further confusion to this issue, I now tried to install sage from
source on an older MacOS 10.15.7 and got this error message. I followed all
the instructions in README.md:
...
[cypari-2.1.5] [spkg-pipinst] Looking in links:
/Users/anne/sage/sage/local/var/lib/sage/venv-pytho
Uploading the logs of the failed packages
/Applications/sage/logs/pkgs/ipykernel-6.27.1.log
/Applications/sage/logs/pkgs/scipy-1.12.0.log
would help.
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Thank you for your suggestions, Dima!
I am still having trouble though:
MacBook-Pro-3:sage anne$ brew update
==> Updating Homebrew...
Already up-to-date.
MacBook-Pro-3:sage anne$ brew reinstall scipy
==> Downloading https://ghcr.io/v2/homebrew/core/scipy/manifests/1.14.1
Already downloaded:
/Use
I get
$ gcc --version
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: x86_64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
What do you get?
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On Tue, Sep 24, 2024 at 9:41 PM Anne Schilling
wrote:
>
> Thank you for your suggestions, Dima!
>
> I am still having trouble though:
>
[...]
> ==> Reinstalling scipy
> ==> Pouring scipy--1.14.1.arm64_sequoia.bottle.tar.gz
> 🍺 /opt/homebrew/Cellar/scipy/1.14.1: 1,389 files, 63.8MB
> ==> Running
For what it's worth, I just upgraded a machine to OS X 15.0, Xcode 16.0,
and as many homebrew packages as Sage requested, and Sage built just fine.
I'm seeing some doctest errors, presumably because of the new Xcode: lots
of warning messages saying something like "warning: ld_classic is
deprec
I get
MacBook-Pro-3:sage anne$ gcc --version
Apple clang version 16.0.0 (clang-1600.0.26.3)
Target: arm64-apple-darwin24.0.0
Thread model: posix
InstalledDir:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
On Tuesday, September 24, 2024 at 7:56:11 PM UTC-7
According to your kiwisolver-1.4.5 log,
[spkg-install] py/src/constraint.cpp:8:10: fatal error: 'algorithm' file
not found [spkg-install] 8 | #include [spkg-install] |
^~~ [spkg-install] 1 error generated. [spkg-install] error: command
'/usr/bin/gcc' failed with exit code 1
your gcc
Hi Dima,
Here is the log for MacOS 10.15.7.
Thank you for your help!
Anne
On Tuesday, September 24, 2024 at 8:38:02 AM UTC-7 dim...@gmail.com wrote:
> Hi Anne,
>
> Please post the log file for this:
>
> package: ipykernel-6.27.1
> last build time: Sep 23 23:48
> log file: /Users/anne/sage/sage
Kwankyu,
I tried changing the directory name, but the same error persists.
Thank you,
Ross George
On Monday, September 23, 2024 at 11:38:06 PM UTC-4 Kwankyu Lee wrote:
> Hi,
>
> It is unusual to pick "/home/username/.sage/sage" as the sage root
> directory. We recommend "/home/username/sage/sa
In the lines of your log
...
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310/py
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310/py/src
[spkg-install] *gcc -Wno-unused-result -Wsign-compare -W
On Wednesday, September 25, 2024 at 1:16:41 PM UTC+9 Kwankyu Lee wrote:
According to your kiwisolver-1.4.5 log,
[spkg-install] py/src/constraint.cpp:8:10: fatal error: 'algorithm' file
not found [spkg-install] 8 | #include [spkg-install] |
^~~ [spkg-install] 1 error generated. [spkg-i
I would also try
sudo xcode-select --reset
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To view this discussion on the
I did
sudo xcode-select --reset
and also tried a different python installation. But I still get the
kiwisolver error.
On Tuesday, September 24, 2024 at 11:05:26 PM UTC-7 Anne Schilling wrote:
> Thank you! I did that, but still got the error message.
>
> I am currently recompiling with a diffe
In the lines of your log
[spkg-install] building 'kiwisolver._cext' extension
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310/py
[spkg-install] creating build/temp.macosx-10.15-x86_64-cpython-310/py/src
[spkg-ins
Thank you! I did that, but still got the error message.
I am currently recompiling with a different python installation.
On Tuesday, September 24, 2024 at 9:48:26 PM UTC-7 Kwankyu Lee wrote:
> I would also try
>
> sudo xcode-select --reset
>
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