Thank you for your suggestions, Dima! I am still having trouble though:
MacBook-Pro-3:sage anne$ brew update ==> Updating Homebrew... Already up-to-date. MacBook-Pro-3:sage anne$ brew reinstall scipy ==> Downloading https://ghcr.io/v2/homebrew/core/scipy/manifests/1.14.1 Already downloaded: /Users/anne/Library/Caches/Homebrew/downloads/fe16e5798590ee2e52b5b555d5ce1e0f6f646aedc0248ae4eeda34fe980d4c03--scipy-1.14.1.bottle_manifest.json ==> Fetching scipy ==> Downloading https://ghcr.io/v2/homebrew/core/scipy/blobs/sha256:6727575f0867f1039c2b473e01404f3e1e5c0dd40a5f589251be77cf3aa0d771 Already downloaded: /Users/anne/Library/Caches/Homebrew/downloads/368f5fc36436883495a8aa83a1a1ce7b29bc78b9e699da3bfb8c370df0f83678--scipy--1.14.1.arm64_sequoia.bottle.tar.gz ==> Reinstalling scipy ==> Pouring scipy--1.14.1.arm64_sequoia.bottle.tar.gz 🍺 /opt/homebrew/Cellar/scipy/1.14.1: 1,389 files, 63.8MB ==> Running `brew cleanup scipy`... Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP. Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`). MacBook-Pro-3:sage anne$ source $SAGE_ROOT/.homebrew-build-env ./bootstrap ... ./configure ... make ... [sage_conf-10.4] [spkg-install] Removing file or directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/bin/sage-config [sage_conf-10.4] [spkg-install] Removing file or directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/bin/sage-env-config [sage_conf-10.4] [spkg-install] Removing file or directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/__editable__.sage_conf-10.4.pth [sage_conf-10.4] [spkg-install] Removing file or directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/__editable___sage_conf_10_4_finder.py [sage_conf-10.4] [spkg-install] Removing file or directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_conf-10.4.dist-info/ [sage_conf-10.4] [spkg-install] Successfully uninstalled sage-conf-10.4 [sage_conf-10.4] [spkg-install] changing mode of /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/bin/sage-config to 755 [sage_conf-10.4] [spkg-install] Successfully installed sage-conf-10.4 [sage_conf-10.4] Moving package files from temporary location /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/sage_conf-10.4/inst to /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9 [scipy-1.12.0] Applying patches from ../patches... [scipy-1.12.0] Applying ../patches/tests_no_internet_dependency.patch [scipy-1.12.0] patching file 'scipy/datasets/meson.build' [sage_conf-10.4] Deleting build directory /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/sage_conf-10.4 [sage_conf-10.4] Finished installing sage_conf-10.4 [scipy-1.12.0] Host system: Darwin MacBook-Pro-3.local 24.0.0 Darwin Kernel Version 24.0.0: Mon Aug 12 20:51:54 PDT 2024; root:xnu-11215.1.10~2/RELEASE_ARM64_T6000 arm64 [scipy-1.12.0] C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.3), Target: arm64-apple-darwin24.0.0, Thread model: posix, InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin [scipy-1.12.0] No stamp file for package 'scipy' in /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/lib/sage/installed [scipy-1.12.0] No spkg-legacy-uninstall script; nothing to do [scipy-1.12.0] [spkg-install] Installing scipy-1.12.0 [scipy-1.12.0] [spkg-install] * Building wheel... [scipy-1.12.0] [spkg-install] Project name: scipy [scipy-1.12.0] [spkg-install] Project version: 1.12.0 [scipy-1.12.0] [spkg-install] C compiler for the host machine: gcc (clang 16.0.0 "Apple clang version 16.0.0 (clang-1600.0.26.3)") [scipy-1.12.0] [spkg-install] C linker for the host machine: gcc ld64 classic PROJECT:ld64 [scipy-1.12.0] [spkg-install] C++ compiler for the host machine: g++ (clang 16.0.0 "Apple clang version 16.0.0 (clang-1600.0.26.3)") [scipy-1.12.0] [spkg-install] C++ linker for the host machine: g++ ld64 classic PROJECT:ld64 [scipy-1.12.0] [spkg-install] Cython compiler for the host machine: cython (cython 3.0.10) [scipy-1.12.0] [spkg-install] Host machine cpu family: aarch64 [scipy-1.12.0] [spkg-install] Host machine cpu: aarch64 [scipy-1.12.0] [spkg-install] Program python found: YES (/Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/bin/python3) [scipy-1.12.0] [spkg-install] Found pkg-config: YES (/opt/homebrew/bin/pkg-config) 0.29.2 [scipy-1.12.0] [spkg-install] Run-time dependency python found: YES 3.9 [scipy-1.12.0] [spkg-install] Program cython found: YES (/Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/bin/cython) [scipy-1.12.0] [spkg-install] Compiler for C supports arguments -Wno-unused-but-set-variable: YES [scipy-1.12.0] [spkg-install] Compiler for C supports arguments -Wno-unused-function: YES [scipy-1.12.0] [spkg-install] Compiler for C supports arguments -Wno-conversion: YES [scipy-1.12.0] [spkg-install] Compiler for C supports arguments -Wno-misleading-indentation: YES [scipy-1.12.0] [spkg-install] Library m found: YES [scipy-1.12.0] [spkg-install] [scipy-1.12.0] [spkg-install] ../meson.build:80:0: ERROR: Compiler gfortran cannot compile programs. [scipy-1.12.0] [spkg-install] [scipy-1.12.0] [spkg-install] A full log can be found at /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.12.0/src/.mesonpy-igf88b0d/meson-logs/meson-log.txt [scipy-1.12.0] [spkg-install] [scipy-1.12.0] [spkg-install] ERROR Backend subprocess exited when trying to invoke build_wheel [scipy-1.12.0] [spkg-install] ******************************************************************************** [scipy-1.12.0] [spkg-install] Error building a wheel for scipy-1.12.0 [scipy-1.12.0] [spkg-install] ******************************************************************************** [scipy-1.12.0] ************************************************************************ [scipy-1.12.0] Error installing package scipy-1.12.0 [scipy-1.12.0] ************************************************************************ [scipy-1.12.0] Please email sage-devel (http://groups.google.com/group/sage-devel) [scipy-1.12.0] explaining the problem and including the log files [scipy-1.12.0] /Users/anne/sage/sage/logs/pkgs/scipy-1.12.0.log [scipy-1.12.0] and [scipy-1.12.0] /Users/anne/sage/sage/config.log [scipy-1.12.0] Describe your computer, operating system, etc. [scipy-1.12.0] If you want to try to fix the problem yourself, *don't* just cd to [scipy-1.12.0] /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.12.0 and type 'make' or whatever is appropriate. [scipy-1.12.0] Instead, the following commands setup all environment variables [scipy-1.12.0] correctly and load a subshell for you to debug the error: [scipy-1.12.0] (cd '/Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.12.0' && '/Users/anne/sage/sage/sage' --buildsh) [scipy-1.12.0] When you are done debugging, you can type "exit" to leave the subshell. [scipy-1.12.0] ************************************************************************ make[4]: *** [scipy-SAGE_VENV-no-deps] Error 1 make[3]: *** [/Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/lib/sage/installed/scipy-1.12.0] Error 2 make[2]: *** [all-start] Error 2 *************************************************************** Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make all-start'): * package: ipykernel-6.27.1 last build time: Sep 24 13:38 log file: /Users/anne/sage/sage/logs/pkgs/ipykernel-6.27.1.log * package: scipy-1.12.0 last build time: Sep 24 13:38 log file: /Users/anne/sage/sage/logs/pkgs/scipy-1.12.0.log It is safe to delete any log files and build directories, but they contain information that is helpful for debugging build problems. WARNING: If you now run 'make' again, the build directory of the same version of the package will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. make[1]: *** [all-start] Error 1 make: *** [all] Error 2 Even though brew installed scipy-1.14.1, the error is about scipy-1.12.0. Best wishes, Anne On Tuesday, September 24, 2024 at 9:28:14 AM UTC-7 dim...@gmail.com wrote: > from your scipy log: > > [spkg-install] Library m found: YES > [spkg-install] > [spkg-install] ../meson.build:80:0: ERROR: Compiler gfortran cannot > compile programs. > [spkg-install] > [spkg-install] A full log can be found at > > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/scipy-1.12.0/src/.mesonpy-f8mmdnb8/meson-logs/meson-log.txt > > The scipy version (1.12) pre-dates macOS 15.0 by almost a year. > That's totally unsurprising that it doesn't work. > Note that even the latest scipy version, 1.14.1, was released before macOS > 15.0. > > I'd suggest to install (update) Homebrew, (to) the latest version. > Install as many Homebrew packages usable by Sage as possible, in > particular scipy, pari-gp, singular, etc, and > run (after the all-important step of sourcing .homebrew-build-env) > > ./configure --enable-system-site-packages --disable-notebook > > to get a semi-minimal configuration before running make. Although I > expect more issues with giac, gap, etc. > Another advantage is that building time will be cut to almost the > minimal (basically, the only big thing to build > will be sagelib itself) > > Dima > > > On Tue, Sep 24, 2024 at 4:39 PM Anne Schilling > <anne1.s...@gmail.com> wrote: > > > > Hi Dima, > > > > Here is the log for MacOS 10.15.7. > > > > Thank you for your help! > > > > Anne > > > > On Tuesday, September 24, 2024 at 8:38:02 AM UTC-7 dim...@gmail.com > wrote: > >> > >> Hi Anne, > >> > >> Please post the log file for this: > >> > >> package: ipykernel-6.27.1 > >> last build time: Sep 23 23:48 > >> log file: /Users/anne/sage/sage/logs/pkgs/ipykernel-6.27.1.log > >> > >> On Tue, Sep 24, 2024 at 8:10 AM Anne Schilling > >> <anne1.s...@gmail.com> wrote: > >> > > >> > > >> > Dear All, > >> > > >> > To add further confusion to this issue, I now tried to install sage > from source on an older MacOS 10.15.7 and got this error message. I > followed all the instructions in README.md: > >> > > >> > ... > >> > [cypari-2.1.5] [spkg-pipinst] Looking in links: > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels > >> > [cypari-2.1.5] [spkg-pipinst] Processing > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels/cypari2-2.1.5-cp310-cp310-macosx_10_15_x86_64.whl > > (from -r > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/lib/sage/scripts/cypari/spkg-requirements.txt > > (line 1)) > >> > [cypari-2.1.5] [spkg-pipinst] Requirement already satisfied: > cysignals>=1.7 in > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/lib/python3.10/site-packages > > (from cypari2@ > file:///Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/lib/sage/wheels/cypari2-2.1.5-cp310-cp310-macosx_10_15_x86_64.whl->-r > > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/lib/sage/scripts/cypari/spkg-requirements.txt > > (line 1)) (1.11.4) > >> > [cypari-2.1.5] [spkg-pipinst] Installing collected packages: cypari2 > >> > [cypari-2.1.5] [spkg-pipinst] Successfully installed cypari2-2.1.5 > >> > [cypari-2.1.5] Deleting build directory > /Users/anne/sage/sage/local/var/lib/sage/venv-python3.10/var/tmp/sage/build/cypari-2.1.5 > >> > [cypari-2.1.5] Finished installing cypari-2.1.5 > >> > [cypari-2.1.5] real 12m29.794s user 10m52.117s sys 0m16.185s > >> > make[2]: *** [all-start] Error 2 > >> > *************************************************************** > >> > Error building Sage. > >> > > >> > The following package(s) may have failed to build (not necessarily > >> > during this run of 'make all-start'): > >> > > >> > * package: ipykernel-6.27.1 > >> > last build time: Sep 23 23:48 > >> > log file: /Users/anne/sage/sage/logs/pkgs/ipykernel-6.27.1.log > >> > > >> > It is safe to delete any log files and build directories, but they > >> > contain information that is helpful for debugging build problems. > >> > WARNING: If you now run 'make' again, the build directory of the > >> > same version of the package will, by default, be deleted. Set the > >> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > >> > > >> > real 44m57.426s user 209m54.674s sys 32m35.642s > >> > make[1]: *** [all-start] Error 1 > >> > make: *** [all] Error 2 > >> > > >> > Best wishes, > >> > > >> > Anne > >> > On Monday, September 23, 2024 at 9:10:12 PM UTC-7 Anne Schilling > wrote: > >> >> > >> >> Hi Kwankyu, > >> >> > >> >> I tried the simplified installation instructions in 38659. Now I get > the following error message (after doing make distclean as well): > >> >> > >> >> [cypari-2.2.0] [spkg-pipinst] Requirement already satisfied: > cysignals>=1.11.3 in > /Applications/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages > > (from cypari2@ > file:///Applications/sage/local/var/lib/sage/venv-python3.9/var/lib/sage/wheels/cypari2-2.2.0-cp39-cp39-macosx_11_0_universal2.whl->-r > > /Applications/sage/local/var/lib/sage/venv-python3.9/var/lib/sage/scripts/cypari/spkg-requirements.txt > > (line 1)) (1.11.4) > >> >> [cypari-2.2.0] [spkg-pipinst] Installing collected packages: cypari2 > >> >> [cypari-2.2.0] [spkg-pipinst] Successfully installed cypari2-2.2.0 > >> >> [cypari-2.2.0] Deleting build directory > /Applications/sage/local/var/lib/sage/venv-python3.9/var/tmp/sage/build/cypari-2.2.0 > >> >> [cypari-2.2.0] Finished installing cypari-2.2.0 > >> >> [cypari-2.2.0] real 1m44.371s user 1m31.273s sys 0m7.499s > >> >> > >> >> make[2]: *** [all-start] Error 2 > >> >> *************************************************************** > >> >> Error building Sage. > >> >> > >> >> The following package(s) may have failed to build (not necessarily > >> >> during this run of 'make all-start'): > >> >> > >> >> * package: ipykernel-6.27.1 > >> >> last build time: Sep 23 20:59 > >> >> log file: /Applications/sage/logs/pkgs/ipykernel-6.27.1.log > >> >> > >> >> * package: scipy-1.12.0 > >> >> last build time: Sep 23 20:59 > >> >> log file: /Applications/sage/logs/pkgs/scipy-1.12.0.log > >> >> > >> >> > >> >> It is safe to delete any log files and build directories, but they > >> >> contain information that is helpful for debugging build problems. > >> >> WARNING: If you now run 'make' again, the build directory of the > >> >> same version of the package will, by default, be deleted. Set the > >> >> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > >> >> > >> >> real 33m20.291s user 80m26.058s sys 15m16.308s > >> >> > >> >> make[1]: *** [all-start] Error 1 > >> >> make: *** [all] Error 2 > >> >> > >> >> Best wishes, > >> >> > >> >> Anne > >> >> > >> >> On Monday, September 23, 2024 at 5:59:17 PM UTC-7 Kwankyu Lee wrote: > >> >>> > >> >>> Hi Anne, > >> >>> > >> >>> The PR https://github.com/sagemath/sage/pull/38659 aims to > simplify the installation instructions in README. > >> >>> > >> >>> As you seem to have a new macOS, would you try the guide in the new > README on your platform? > >> >>> > >> >>> I have no idea about the cause of your troubles though. > >> >>> > >> >>> Kwankyu > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to sage-devel+...@googlegroups.com. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/a53e3416-59c2-4364-9a2d-b5e031d99916n%40googlegroups.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-devel+...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/a32bf782-ac78-4fec-90d2-a1254653e30bn%40googlegroups.com > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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