Dear all,
I'm trying to install rpy on my Mac OS X 10.4. I currently use python
2.4 and R 2.5.1. I followed instructions found in the README file and
other past messagges. I went into the main rpy folder running the
following command:
python setup.py build
and I had the message:
RHOMES= [
Revision: 515
http://rpy.svn.sourceforge.net/rpy/?rev=515&view=rev
Author: warnes
Date: 2008-05-14 06:53:05 -0700 (Wed, 14 May 2008)
Log Message:
---
Minor changes to remove compilation warnings
Modified Paths:
--
trunk/rpy/src/RPy.h
trunk/rpy/src/io.c
Hi Ernesto,
These warning messages are normal, albeit annoying.I've just made
commited changes to the the SVN repository to avoid the ones from
rpymodule.c and io.c, so this should be less of a problem in the future.
-Greg
On May 14, 2008, at 3:34AM , Ernesto wrote:
Dear all,
I'm
Hi Dirk,
Is it sufficient to simply add lapack to the list of libraries?
libraries=['R','Rlapack','lapack']
-Greg
On May 13, 2008, at 9:38AM , Dirk Eddelbuettel wrote:
Hi Greg,
On 12 May 2008 at 23:54, Gregory. R. Warnes wrote:
| Hi All,
|
| I've just placed RPy 1.0.3 on SourceFor
Hi Greg,
On Wed, May 14, 2008 at 10:08:29AM -0400, Gregory. R. Warnes wrote:
>
> Hi Dirk,
>
> Is it sufficient to simply add lapack to the list of libraries?
>
> libraries=['R','Rlapack','lapack']
Nice idea, but I'm afraid no cigar yet. From a test build I just launched:
[...]
gcc -p
By the way, the default compilation for python modules is with
the flag -Wstrict-prototypes.
It used to generate a number of warnings, and after I reported
it on the r-devel list, it was solved (for R-2.7).
(well mostly, there is a last warning:
include/R_ext/Rdynload.h:26: warning: function declar
Revision: 516
http://rpy.svn.sourceforge.net/rpy/?rev=516&view=rev
Author: warnes
Date: 2008-05-14 10:05:47 -0700 (Wed, 14 May 2008)
Log Message:
---
Add note about checking for Rlapack
Modified Paths:
--
trunk/rpy/TODO
Modified: trunk/rpy/TODO
===
Too bad.
I guess I'll have to either add code to look for
libRlapack.so
in the appropriate directory. Know of any simple way to do this?
-G
On May 14, 2008, at 10:16AM , Dirk Eddelbuettel wrote:
Hi Greg,
On Wed, May 14, 2008 at 10:08:29AM -0400, Gregory. R. Warnes wrote:
>
> Hi
Revision: 517
http://rpy.svn.sourceforge.net/rpy/?rev=517&view=rev
Author: warnes
Date: 2008-05-14 10:10:57 -0700 (Wed, 14 May 2008)
Log Message:
---
Turn off debug build flag for default installs, add todo about Rlapack/lapack
Modified Paths:
--
trunk/rpy/
On Wed, May 14, 2008 at 01:06:38PM -0400, Gregory Warnes wrote:
> Too bad.
>
> I guess I'll have to either add code to look for
>
> libRlapack.so
>
> in the appropriate directory. Know of any simple way to do this?
Glad you asked :) I remembered that 'R CMD ...' added the new command
'co
Revision: 518
http://rpy.svn.sourceforge.net/rpy/?rev=518&view=rev
Author: lgautier
Date: 2008-05-14 10:41:25 -0700 (Wed, 14 May 2008)
Log Message:
---
- updated closing an embeddedR (looking at the corresponding test
in the R source tree)
- added missing DECREF
- Environme
Revision: 519
http://rpy.svn.sourceforge.net/rpy/?rev=519&view=rev
Author: lgautier
Date: 2008-05-14 10:43:00 -0700 (Wed, 14 May 2008)
Log Message:
---
more tests
Modified Paths:
--
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpClosure.py
branches/
Revision: 520
http://rpy.svn.sourceforge.net/rpy/?rev=520&view=rev
Author: lgautier
Date: 2008-05-14 10:44:12 -0700 (Wed, 14 May 2008)
Log Message:
---
missing file (should have be in SVN some time ago)
Added Paths:
---
branches/rpy_nextgen/rpy/rinterface/__ini
Revision: 521
http://rpy.svn.sourceforge.net/rpy/?rev=521&view=rev
Author: lgautier
Date: 2008-05-14 10:46:33 -0700 (Wed, 14 May 2008)
Log Message:
---
First stab at ensuring compatibility with the current RPy (1.x)
Added Paths:
---
branches/rpy_nextgen/rpy/rpy
Revision: 522
http://rpy.svn.sourceforge.net/rpy/?rev=522&view=rev
Author: lgautier
Date: 2008-05-14 10:51:40 -0700 (Wed, 14 May 2008)
Log Message:
---
Ooops. This one was not in for a good reason.
Removed Paths:
-
branches/rpy_nextgen/rpy/rinterface/__init
Support Requests item #1576013, was opened at 2006-10-12 11:49
Message generated for change (Comment added) made by warnes
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=453022&aid=1576013&group_id=48422
Please note that this message will contain a full copy of the
Anyway I tried to invoke the installation by:
python setup.py install (as root)
and all seems fine, just a warning during the plotting but the plot
is correct.
Many thanks
Ernesto
Il giorno 14/mag/08, alle ore 15:56, Gregory Warnes ha scritto:
Hi Ernesto,
These warning messages are nor
Revision: 523
http://rpy.svn.sourceforge.net/rpy/?rev=523&view=rev
Author: warnes
Date: 2008-05-14 11:31:21 -0700 (Wed, 14 May 2008)
Log Message:
---
Use the 'R CMD config LAPACK_LIBS' command to determin the appropriate link
flags for lapack, instead of blindly assuming t
Revision: 524
http://rpy.svn.sourceforge.net/rpy/?rev=524&view=rev
Author: warnes
Date: 2008-05-14 11:33:26 -0700 (Wed, 14 May 2008)
Log Message:
---
remove completed TODO entry
Modified Paths:
--
trunk/rpy/TODO
Modified: trunk/rpy/TODO
===
I just committed a change to use R CMD config LAPACK_LIBS. Can you
check if it behaves properly?
-G
On May 14, 2008, at 1:14PM , Dirk Eddelbuettel wrote:
On Wed, May 14, 2008 at 01:06:38PM -0400, Gregory Warnes wrote:
> Too bad.
>
> I guess I'll have to either add code to look for
>
>
On Wed, May 14, 2008 at 02:36:27PM -0400, Gregory Warnes wrote:
> I just committed a change to use R CMD config LAPACK_LIBS. Can you
> check if it behaves properly?
I get the commit emails, so I just hand-applied the changes to the two files.
Seems to work fine -- i.e. it built. So thumbs up!
Yea!
On May 14, 2008, at 3:08PM , Dirk Eddelbuettel wrote:
On Wed, May 14, 2008 at 02:36:27PM -0400, Gregory Warnes wrote:
> I just committed a change to use R CMD config LAPACK_LIBS. Can you
> check if it behaves properly?
I get the commit emails, so I just hand-applied the changes to the
Hi,
I just installed R and rpy on Opensuse 10.3. I managed to get it work
once. But then all of a sudden it won't work again. Here is the info.
I compiled R-2.7.0 with configure --enable-R-shlib. And it's installed in
the standard location, /usr/local/lib64/R
$ls /usr/local/lib64/R/lib
libRb
Hmm.
Does rerunning the install make a difference?
-G
On May 14, 2008, at 4:44PM , Manu Hack wrote:
Hi,
I just installed R and rpy on Opensuse 10.3. I managed to get it
work once. But then all of a sudden it won't work again. Here is
the info.
I compiled R-2.7.0 with configure --en
On Wed, May 14, 2008 at 4:49 PM, Gregory Warnes <[EMAIL PROTECTED]>
wrote:
> Hmm.
>
> Does rerunning the install make a difference?
>
> -G
>
No, one more information is that when I was able to run it, on that
terminal, I can run it without problem. But in the other terminal, I can't
run it (gett
Is there a difference in the environment variables, particularly the
value of RHOME?
-G
On May 14, 2008, at 5:39PM , Manu Hack wrote:
On Wed, May 14, 2008 at 4:49 PM, Gregory Warnes
<[EMAIL PROTECTED]> wrote:
Hmm.
Does rerunning the install make a difference?
-G
No, one more informati
On Wed, May 14, 2008 at 5:50 PM, Gregory Warnes <[EMAIL PROTECTED]>
wrote:
>
> Is there a difference in the environment variables, particularly the value
> of RHOME?
>
> -G
>
No, RHOME are the same.
>
> On May 14, 2008, at 5:39PM , Manu Hack wrote:
>
> On Wed, May 14, 2008 at 4:49 PM, Gregory
Revision: 525
http://rpy.svn.sourceforge.net/rpy/?rev=525&view=rev
Author: lgautier
Date: 2008-05-14 22:21:26 -0700 (Wed, 14 May 2008)
Log Message:
---
Propagated the recent fix in RPy-1.x (case where R is compiled to use
already installed BLAS/LAPACK libraries)
(see thread
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