Hi Dirk,
Is it sufficient to simply add lapack to the list of libraries?
libraries=['R','Rlapack','lapack']
-Greg
On May 13, 2008, at 9:38AM , Dirk Eddelbuettel wrote:
Hi Greg,
On 12 May 2008 at 23:54, Gregory. R. Warnes wrote:
| Hi All,
|
| I've just placed RPy 1.0.3 on SourceForge. The primary purpose of
| this release is to provide support for R 2.7.0.
Thanks for that.
As with 1.0.2, we need a baby-patch (see below) on Debian. The
reason is
that we now used gfortran as the default Fortran compiler which
allowed us to
upgrade Blas, Lapack, Atlas, ... so that I am now configuring R to
the system
lapack rather than its own.
That breaks your unconditional 'link with Rlapack' instruction. I
don't
really do Python and cannot hack setup.py, but could someone possibly
contribute another branch in the configuration for 'unix but no
Rlapack.so' ?
Dirk
--- rpy-1.0.3.orig/setup.py
+++ rpy-1.0.3/setup.py
@@ -160,7 +160,8 @@
else: # unix-like systems, this is known to work for Linux and
Solaris
include_dirs = [ os.path.join(RHOME.strip(), 'include'),
'src', '/usr/share/R/include' ]
- libraries=['R','Rlapack']
+# libraries=['R','Rlapack']
+ libraries=['R','lapack']
library_dirs = r_libs
runtime_libs = r_libs
extra_compile_args=["-shared"]
--
Three out of two people have difficulties with fractions.
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Gregory R. Warnes, Ph.D.
Associate Professor
Center for Biodefence Immune Modeling
and
Department of Biostatistics and Computational Biology
University of Rochester
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