Assigning to GlobalEnv does not seem to be required.
With rpy2-2.2.0dev, a standalone example can be like:
import rpy2.interactive as r
r.importr('survcomp')
# set up the stage (omitted from earlier code snippet)
age = r.packages.stats.rnorm(100, 50, 10)
sex = r.packages.base.sample(r.IntVector
>
> Hello!
>
> I solved this problem(finally!) and thought I would put up the solution if
> anyone was interested. The only thing that's left is converting my output to
> a dictionary...which I am still working on.
>
> Here's what it looked like:
>
> from numpy import *
> from scipy import *
> from
On Mon, Apr 18, 2011 at 5:24 PM, Anamaria Crisan
wrote:
> Hi,
> I've tried changing the conversion mode as suggested, however it will die at
> the r_result = cindex(x=prob, surv_time=survTIME, surv_even=survEVENT)
> line. I don't know how often R methods have var.name , but if someone else
> has
O_CONVERSION)
>>
>>
>>
>> # YOUR CODE HERE
>>
>>
>>
>> r_result = cindex(x=prob, surv_time=survTIME,
>> surv_even=survEVENT)
>>
>>
>>
>> py_result=result.as_py(rpy.BASIC
nomedx.com]
Sent: Friday, April 15, 2011 12:59 PM
To: rpy-list@lists.sourceforge.net
Cc: Peter
Subject: Re: [Rpy] Rpy and dot names
I have one more point I would like to add.
When I run all of the code in R, it works just fine. If I make a
small python
> I have one more point I would like to add.
>
> When I run all of the code in R, it works just fine. If I make a small
> python file with exactly the code I ran in R, it gives me the 'not all
> arguments have the same length' error. I will continue to check my code, but
> I am suspicious that its
On Fri, Apr 15, 2011 at 4:56 PM, Anamaria Crisan wrote:
> I am using just Rpy. Would RPy2 be the solution?
>
Possibly - and in the long term it would be worth looking at,
but there are quite a few API changes to beware of.
Back in rpy (v1), to run an R command like:
cindex(x=prob, surv.time=sur
I am using just Rpy. Would RPy2 be the solution?
On Fri, Apr 15, 2011 at 2:30 AM, Peter wrote:
> On Fri, Apr 15, 2011 at 1:08 AM, Anamaria Crisan wrote:
> > Hello,
> > I am trying to use RPy to run an R package called survcomp. One of the
> > methods takes in the variable name surv.time. For exa
On Fri, Apr 15, 2011 at 1:08 AM, Anamaria Crisan wrote:
> Hello,
> I am trying to use RPy to run an R package called survcomp. One of the
> methods takes in the variable name surv.time. For example, I can run it as
> follows:
> cindex(x=prob,surv.time=survTIME, surv.even=survEVENT) in R (where x,
Hello,
I am trying to use RPy to run an R package called survcomp. One of the
methods takes in the variable name surv.time. For example, I can run it as
follows:
cindex(x=prob,surv.time=survTIME, surv.even=survEVENT) in R (where x,
suvr.time and surv.event are predefined variable names from the p
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