On Fri, Apr 15, 2011 at 1:08 AM, Anamaria Crisan <a...@genomedx.com> wrote:
> Hello,
> I am trying to use RPy to run an R package called survcomp. One of the
> methods takes in the variable name surv.time. For example, I can run it as
> follows:
> cindex(x=prob,surv.time=survTIME, surv.even=survEVENT) in R (where x,
> suvr.time and surv.event are predefined variable names from the package).
> However I get an error in python.
>  If I leave the synatx as surv.time I get the following error: SyntaxError:
> keyword can't be an expression.
> If I change surv.time to surv_time I get a new error: not all arguments have
> the same length. Which I checked and as far as I can tell all inputs do have
> the same length.
> I know the problem is the dot in surv.time variable. I wonder, can Rpy work
> when there is  dot in the variable name, does R know how to translate it?
> Any help is much appreciated,

Which version of rpy or rpy2 are you using?

Peter

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