Joris Meys
Statistician
T +32 9 264 61 79
Department Data Analysis and Mathematical Modelling
Campus Coupure, Block A 1st floor 110.050, Coupure links 653, B-9000 Ghent,
Belgium
T administration office +32 9 264 59 32
www.ugent.be
e-maildisclaimer
a bit more time testing it
myself first.
Kind regards
Joris
Joris Meys
Statistician
T +32 9 264 61 79
Department Data Analysis and Mathematical Modelling
Campus Coupure, Block A 1st floor 110.050, Coupure links 653, B-9000 Ghent,
Belgium
T administration office +32 9 264 59 32
www.u
Hi Stefan,
you need the function makeNamespace() to create the environment as a namespace.
Look at the examples in the help files, I found them rather instructive. I also
hope someone else chimes in to shed some light on whether or not that approach
would be acceptable.
Joris Meys
eone else
chimes in, especially if this is dangerous for other reasons I overlooked.
Kind regards
Joris
Joris Meys
Statistician
T +32 9 264 61 79
Department Data Analysis and Mathematical Modelling
Campus Coupure, Block A 1st floor 110.050, Coupure links 653, B-9000 Ghent,
Belgium
T administrat
nd am liking it so far (2 years
now). I find it less intrusive than Bitdefender as well, even though I had no
complaints in the past.
Kind regards
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links
find more information in this section of the manual:
https://cran.r-project.org/doc/manuals/R-exts.html#Writing-package-vignettes
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gen
hod("foo", ..1)
}
foo.factor <- function(..., data){
x <- list(...)
x$data <- data
x
}
foo.formula <- function(..., data){
x <- list(...)
x$data <- data
x
}
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Mod
umfff.
foo(y,x) will dispatch to foo.numeric() obviously
__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
.list()
foo(y,x) will dispatch to foo.character()
You'll be in a world of hurt if you want to maintain or update that code. If
you insist on using S3, you'll have to fix the position (and hence the name) of
the argument you want to dispatch on.
my 2 cents
Cheers
Joris
--
Joris Meys
S
. See also ?rgb2col and ?colors.
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
--
Disclaimer : http://helpdesk.ugent.be/e-maildisclaimer.php
nst a R-devel. I use devtools
myself extensively, but these checks have to be done outside the RStudio
ecosystem to be sure.
Kind regards
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653,
appreciated, I'd like to submit this package before the holidays.
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
--
Disclaimer : http:
-719cb2d9e0e5
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
--
Disclaimer : http://helpdesk.ugent.be/e-maildisclaimer.php
s a
> requirement (not retrospectively, but at least for new / resubmissions).
>
> Best,
> Wolfgang
>
> ______
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Department of
> > John
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >
>
> [[alternative HTML version deleted]]
>
> __
ocal on numerous occasions about standards they
hold. I would appreciate if the chief scientist of RStudio abides by those
standards.
Thank you.
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
&l
Kind regards
Joris
On Wed, May 15, 2019 at 11:06 AM Joris Meys wrote:
> Dear Hadley,
>
> given you're on the list of R foundation members, I rest assured you have
> other channels to ask about the identity of new CRAN staff directly to
> those responsible. Their names and payche
the scope of these additional checks?
>
> Hadley
>
> [^1]: The devoid package was rejected because the student assistant
> did not understand the purpose of the package.
>
> [^2]: The gargle package was rejected because the student assistant
> believed that the use of cat() was
is empty/not working , could this be a reason for the
> > > malfunction? Or is it normal?
> > > Here is the report :
> > >
> >
> https://win-builder.r-project.org/incoming_pretest/DataViz_0.2_20190228_113204/Windows/00check.log
> > >
> > >
> &g
All best
> Troels
>
>
>
>
>
>
> [[alternative HTML version deleted]]
>
> __
> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org>
> mailing list
> https://stat.ethz.ch/mailman/listinfo/r-p
in which I could achieve the right
> default behavior and respect the CRAN policies?
>
>
> Thank you for your time.
>
> ______
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
itle
> says the solution should work on CRAN too.
>
> --
> Michael
> http://www.dewey.myzen.co.uk/home.html
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
Paul Hargarten, M.S.
> PhD Candidate
> Biostatistics, VCU School of Medicine
> Biochemistry and Molecular Biology, B.S.; Chemistry, B.A. ; Mathematics,
> minor
> hargart...@vcu.edu
>
> [[alternative HTML version deleted]]
>
>
______
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> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
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Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
<https://m
.10.tar.gz
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure
PU or elapsed time > 10s
> user system elapsed
> plot_radii_results 34.112 2.036 36.148
> print_colour_assignment 33.912 2.016 35.932
> plot.hoops 14.900 0.200 15.100
> plot.schematic 14.316 0.292 14.608
> plot
ive HTML version deleted]]
>
> __
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> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
hence doesn't export the method
itself).
On Thu, Jul 5, 2018 at 4:18 PM, Joris Meys wrote:
> I see that you realized it was Inaki who gave you he patch, not me :-)
>
> I've been looking into this further, and the toy example David put up is
> actually not the right one to l
age:::foo.bar
>> ## function (x, ...) cat("In foo.bar")
>> ##
>> ##
>> x <- structure(1, class='bar')
>> foo(x)
>> ## Error in UseMethod("foo") :
>> ## no applicable method for 'foo' applied to an object of clas
think it does matter. Methods are found on the search path, but
the environment where the methods are defined is not on the search path.
It's a child environment of the namespace, and hence cannot be reached from
either the global environment or the namespace if I understood it correctly.
Ch
environment as far as I can tell. That's where I would
start looking.
CHeers
Joris
On Wed, Jul 4, 2018 at 8:12 PM, David Hugh-Jones
wrote:
> I figured that. Actually I just tried this. I now get the interesting
> result that all calls to a generic fail with the UseMethod error...?
&
you should generally only export the generic, not
the individual methods.
More information here:
https://cran.r-project.org/doc/manuals/R-exts.html#Registering-S3-methods
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent Universit
8fc47167 *NAMESPACE
> f9a81f720aebf5398a94efa32a2047a5 *R/AAA.R
> e8b6adbe6a0b2cf61f433762e1fd16dd *R/arff.R
>
> It looks like such updates to existing tarballs cause troubles
> downstream (e.g. EasyBuild). Although these updates are minor (in a
> functional sense), it does mean
hz.ch/mailman/listinfo/r-package-devel
> >
>
>
>
> --
> alejandro baranek
> @ken4rab <https://twitter.com/ken4rab>
> qbotics <http://qbotics.tumblr.com/> | surferinvaders
> <http://surferinvaders.tumblr.com> | algebraic-soundscapes
&
/easybuild-easyconfigs/issues/6501
Cheers
Joris
On Wed, Jun 27, 2018 at 3:30 PM, Joris Meys wrote:
> Dear Uwe,
>
> sorry to bother you again with it, but I was wondering if you had some
> more idea about what happened. I just received another one, this time about
> mgcv_1.8-23.tar.gz. It
I can
check at this side to make it easier for you?
Cheers
Joris
On Thu, Jun 14, 2018 at 6:55 PM, Joris Meys wrote:
> Dear Uwe,
>
> Thank you for willing to take a look. In the report it was about the
> following tarballs :
>
> pkgmaker_0.22.tar.gz
> rngtools_1.2.4.tar.
46 PM, Uwe Ligges wrote:
>
>
> On 13.06.2018 15:40, Joris Meys wrote:
>
>>
>>
>> On Wed, Jun 13, 2018 at 3:16 PM, Uwe Ligges <
>> lig...@statistik.tu-dortmund.de <mailto:lig...@statistik.tu-dortmund.de>>
>> wrote:
>>
>>
&
al tarballs the md5 sums remain the
same? Or if you have other suggestions to deal with this without having to
change hardcoded checksums in the easybuild repos, that would be very
welcome too.
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
. That's the only way I know a MD5 checksum of a
tarball can change without any change to the files in there.
Anyone knows what is going on here, and how this can be circumvented at the
client side?
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathema
ng remotely
helpful there.
I do not want to contest the decisions made, but it's hard to train/help
people correctly if we can't rely on the official documentation any longer
to know what is and what is not accepted. And for the moment that seems to
be the case.
Cheers
Joris
--
ed to the file you
sent to CRAN.
Cheers
Joris
On Wed, May 30, 2018 at 5:17 PM, Joris Meys wrote:
> Hi Khoong,
>
> I'm going to address the elephant in the room: your package is not ready
> for CRAN, and I'm not even sure CRAN is the right place for that code.
>
> T
gt; >
> > Wei Hao Khoong (Mr)
> >
> > -Original Message-
> > From: uwe.lig...@r-project.org
> > Sent: Wednesday, 30 May 2018 12:11 AM
> > To: khoongwei...@hotmail.com
> > Cc: cran-submissi...@r-project.org
> > Subject: [CRAN-pretest-arc
h the class definitions. Are you
sure freelsgen returns the class you expect it to return?
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
<https://maps.google.com/?q=Coupure+links
ould be great if these generics could be made available through stats4.
If this would be the prefered route, I volunteer to create the patch for
that.
Any thoughts?
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Co
the code above should just work fine,
but it generates the warning.
How can one get these names without having to browse through the directory
with html files?
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 6
I wrongfully stated that CRAN added a line. The line was not added but
changed (and not in the SVN repo). A diff between both downloads is
available here:
https://gist.github.com/boegel/2ea28647f00ddd9b18f9b1a0ac6dd2b4
Cheers
Joris
On Mon, Apr 30, 2018 at 6:03 PM, Joris Meys wrote:
> I
bumping the version
number, and technically that's what it boils down to.
Anyone who knows what's going on there?
Reference to twitter discussion with Kenneth Hoste about this :
https://twitter.com/kehoste/status/990484417721389056
Kind regards
Joris
--
Joris Meys
Statistical
SAI - Campus de Ker-Lann
> Rue Blaise Pascal - BP 37203
> 35172 Bruz cedex
> FRANCE
>
> Tel: +33 (0)2 99 05 32 55
> Fax: +33 (0)2 99 05 32 05
> Email: pavlo.mozharovs...@ensai.fr
>
> http://www.ensai.fr/enseignant/alias/pavlo-mozharovskyi.html
> __
ation data, the loading could be disabled with
> e.g. —vanilla.
>
If it's standardized and included in R itself, I'm all for it.
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Ge
t;R", version = "mypackage")
> [1] "/Users/gaborcsardi/Library/Application Support/R/mypackage"
>
> ## Linux
> ❯ rappdirs::user_config_dir("R", version = "mypackage", os = "unix")
> [1] "/Users/gaborcsardi/.config/R/mypackage&
will overcome youth and skill."
>> "From those who have been given much, much will be expected"
>> "the arc of the moral universe is long, but it bends toward justice" -MLK
>> Jr.
>>
>> __
>>
Hi Knut,
on a sidenote: did you try the Rd2roxygen package? That could also make
your work a lot easier.
https://cran.r-project.org/web/packages/Rd2roxygen/index.html
Cheers
Joris
On Mon, Mar 12, 2018 at 8:15 PM, Joris Meys wrote:
> Hi Knut,
>
> If you want to add parameters, you ne
ers to the function
> description, so that the \item{...}{ some parameters } will be created in
> the .rd file
>
> Kind regards Knut
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listin
ssage and explain.
>
> More details are given in the directory:
> <https://win-builder.r-project.org/incoming_pretest/
> 180301_161113_apaTables_201>
> The files will be removed after roughly 7 days.
>
>
> Best regards,
> CRAN teams' auto-check service
>
>
> [[alt
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Bel
e: PlotMDS
> > ### Aliases: PlotMDS
> > ### Keywords: ~kwd1 ~kwd2
> >
> > ### ** Examples
> >
> > PlotMDS()
> Error in PlotMDS() : could not find function "PlotMDS"
> Execution halted
> * checking PDF version of manual ... OK
> * DONE
> Statu
5, b = 5:1)
relcount <- function(x, id){
table(x[,id]) / length(x[,id])
}
relcount(x, "a")
relcount(as.data.frame(x), "a")
You're welcome.
>
> Hadley
>
> --
> http://hadley.nz
>
--
Joris Meys
Statistical consultant
Ghent University
Faculty
n that drop = FALSE on a stake. But for now we can't
ignore the differences and the potential for conflicts when you try to use
a tibble instead of a data.frame.
With respect
Joris
--
Joris Meys
Statistical consultant
Ghent University
Faculty of Bioscience Engineering
Department of Mathe
it exists, and causes conflicts when users expect a tibble to
behave the same as a data.frame.
It does not.
--
Joris Meys
Statistical consultant
Ghent University
Faculty of Bioscience Engineering
Department of Mathematical Modelling, Statistics and Bio-Informatics
tel : +32 9 264 59
that tibble users are more prone to
expect all code to work exactly like it does with data.frames. Which it
obviously doesn't.
--
Joris Meys
Statistical consultant
Ghent University
Faculty of Bioscience Engineering
Department of Mathematical Modelling, Statistics and Bio-Informatics
tel : +32 9
indicate why.
>
> Kindly,
> Stefan
>
> Stefan McKinnon Høj-Edwards
> ph.d. Genetics
> +44 (0)776 231 2464 <+44%207762%20312464>
> +45 2888 6598 <+45%2028%2088%2065%2098>
> Skype: stefan_edwards
>
> 2017-09-26 10:05 GMT+01:00 Joris Meys :
>
>>
ass "data.frame"?
> >
> > Göran Broström
> >
> > __
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
> [[alternative HTML version deleted]]
>
Hi Duncan,
I hoped against all odds to get a different answer, but alas you confirm my
biggest fears. I'll get in touch with the shiny guys and hope they'll grant
me my wishes.
Cheers
Joris
On Thu, Jul 6, 2017 at 12:03 AM, Duncan Murdoch
wrote:
> On 05/07/2017 3:19 PM, Jor
ing ::: on CRAN? When I run R CMD
check --as-cran it only gives a note, but just to be sure...
- anybody a better option to be able to use eg shiny:::selectizeIt,
shiny:::selectOptions etc?
Thank you in advance
Joris
--
Joris Meys
Statistical consultant
Ghent University
Faculty of Bioscience Enginee
> wrote:
>
>> Could you point to one of these packages you refer to? I'm still having
>> problems and not sure why at the moment.
>>
>> Thanks
>>
>> On Mon, Jun 26, 2017 at 12:32 PM, Joris Meys wrote:
>>
>>> Hi Charles,
>>>
&g
some nice examples on the help page of ?dotsMethods
Cheers
Joris
On Mon, Jun 26, 2017 at 7:42 PM, Charles Determan
wrote:
> Could you point to one of these packages you refer to? I'm still having
> problems and not sure why at the moment.
>
> Thanks
>
> On Mon, Jun 26, 20
I call 'pmax' on the class.
>
> > pmax(x, 0)
>
> Error in mmm < each :
> comparison (3) is possible only for atomic and list types
> In addition: Warning message:
> In is.na(mmm) : is.na() applied to non-(list or vector) of type 'S4'
>
> Regard
seems odd that one would to redefine a the generic when in states in
> the docs for 'pmax' that it will also work on classed S3 objects but
> perhaps I am reading this incorrectly.
>
> Thanks,
> Charles
>
> [[alternative HTML version deleted]]
>
> _
t; that I have a couple of thousand users.
> >
> > My first thought would be to release an update which gives a warning
> about
> > the future change when the package is loaded; then release a package with
> > the new name and continue development on this branch.
> >
n into this situation?
>
> Best Glenn
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
--
Joris Meys
Statistical consultant
Ghent University
Faculty of Bioscience
INGS without removing the one I have.
>
> I have read the "Writing R documentation files", but there is no special
> description of method "[", and I am struggling to understand what's wrong.
>
> Thank you very much in advance
>
> Stefano
>
> _
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