On 30 January 2017 at 09:58, Kevin Ushey wrote:
| The correct thing to do is indeed import any functions from any R packages
| you use, base or otherwise. The simplest fix, if you don't want to
| selectively import such a large range of functions, is to simply add e.g.
|
| import(utils)
|
Thanks Thierry, that indeed was the problem.
I am not sure who to advise to correct the documentation in Writing R
Extensions though because I was following the instructions there:
"... the encoding may be declared using a comment like
%!\VignetteEncoding{UTF-8}
If the encoding is UTF-8, this
Thank you. That will be why I didn't see them previously. Helps my sanity ;-)
Sent from my iPhone
> On Jan 30, 2017, at 8:58 PM, Kevin Ushey wrote:
>
> Most importantly, this _is_ a recent-ish change in R CMD check. Previously, R
> CMD check did not warn about missing imports from 'base' R pac
On 30/01/2017 12:04 PM, Cathy Lee Gierke wrote:
That is the obvious solution, but it doesn't seem correct: I have pdf
included in the description, and namespace files, yet it is being called
out. Additionally, aren't most of these pkgs in the packages included by
default?
And up until yesterda
Most importantly, this _is_ a recent-ish change in R CMD check. Previously,
R CMD check did not warn about missing imports from 'base' R packages (that
is, R packages distributed with R, having priority 'base'); now it
correctly does. While packages with priority 'base' are loaded by default
in mos
On Mon, Jan 30, 2017 at 12:04 PM, Cathy Lee Gierke wrote:
> That is the obvious solution, but it doesn't seem correct: I have pdf
> included in the description, and namespace files, yet it is being called
> out. Additionally, aren't most of these pkgs in the packages included by
> default?
>
N
See the link in my email below. It says:
"Packages implicitly import the base namespace. Variables exported from
other packages with namespaces need to be imported explicitly using the
directives import and importFrom."
Regards,
Brian
On Mon, 2017-01-30 at 11:04 -0600, Cathy Lee Gierke wrote:
>
That is the obvious solution, but it doesn't seem correct: I have pdf
included in the description, and namespace files, yet it is being called
out. Additionally, aren't most of these pkgs in the packages included by
default?
And up until yesterday, I didn't have any of these problems. I've been
The error you reference below is pretty clear, I think.
You need to add imports for all the functions you're using from other
packages.
See: https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Speci
fying-imports-and-exports
Regards,
Brian
On Mon, 2017-01-30 at 10:39 -0600, Cathy Lee G
On 30 January 2017 at 10:39, Cathy Lee Gierke wrote:
| Everything was fine, a few minor warnings...now this. Description and
| namespace are proper. These pkgs should all be part of the R base, aren't
| they? Anyone know why I should get these errors? Thanks!
Just read what it says and do that
Yes, that seemed to get rid of the NOTEbut it doesn't seem to make much
difference other than that. i.e., it seems to process the same using
CATkit vs CATkit_2.06.tar.gz!
Here is the main error that I am getting. I just upgraded to the latest R
version, fyi.
Everything was fine, a few minor
On Mon, 2017-01-30 at 09:45 -0600, Cathy Lee Gierke wrote:
> building ‘CATkit_2.06.tar.gz’
R CMD build creates a tarball
> x-134-84-0-217:CATkit user$ *R CMD check CATkit*
but you are checknig the directory, not the tarball.
do
R CMD check CATkit_2.06.tar.gz
instead.
Regards,
Brian
_
I'm getting a Note that I don't understandand I think it may be the
cause of other errors later I have copied all of the output up to the
error for context. The error line is at the end. It seems to say that I
have not done a Build before doing the Check, but I did
x-134-84-0-217:~
Dear David,
Have you tried removing the exclamation mark in %!\VignetteEncoding{UTF-8}?
I think it should be %\VignetteEncoding{UTF-8}
Best regards,
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biome
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