See the link in my email below. It says: "Packages implicitly import the base namespace. Variables exported from other packages with namespaces need to be imported explicitly using the directives import and importFrom."
Regards, Brian On Mon, 2017-01-30 at 11:04 -0600, Cathy Lee Gierke wrote: > That is the obvious solution, but it doesn't seem correct: I have > pdf included in the description, and namespace files, yet it is being > called out. Additionally, aren't most of these pkgs in the packages > included by default? > > And up until yesterday, I didn't have any of these problems. I've > been compiling and running this for several years. But now I want to > release to CRAN, so I've been fixing minor issues....and suddenly > this mass of Notes. > > Thank you, > > Cathy Lee Gierke > > “Darkness cannot drive out darkness: only light can do that. Hate > cannot drive out hate: only love can do that.” > > “The arc of the moral universe is long, but it bends towards > justice.” > “Nothing in the world is more dangerous than sincere ignorance and > conscientious stupidity.” > “Never forget that everything Hitler did in Germany was legal.” > “Forgiveness is not an occasional act, it is a constant attitude.” > “Injustice anywhere is a threat to justice everywhere.” > > ― Martin Luther King Jr. > > > On Mon, Jan 30, 2017 at 10:52 AM, Brian G. Peterson <brian@braverock. > com> wrote: > > The error you reference below is pretty clear, I think. > > > > You need to add imports for all the functions you're using from > > other packages. > > > > See: https://cran.r-project.org/doc/manuals/r-release/R-exts.html#S > > pecifying-imports-and-exports > > > > Regards, > > > > Brian > > > > > > -- > > Brian G. Peterson > > http://braverock.com/brian/ > > Ph: 773-459-4973 > > IM: bgpbraverock > > > > On Mon, 2017-01-30 at 10:39 -0600, Cathy Lee Gierke wrote: > > > Yes, that seemed to get rid of the NOTE....but it doesn't seem to > > > make much difference other than that. i.e., it seems to process > > > the same using CATkit vs CATkit_2.06.tar.gz! > > > > > > Here is the main error that I am getting. I just upgraded to the > > > latest R version, fyi. > > > > > > Everything was fine, a few minor warnings...now this. > > > Description and namespace are proper. These pkgs should all be > > > part of the R base, aren't they? Anyone know why I should get > > > these errors? Thanks! > > > > > > * checking R code for possible problems ... NOTE > > > Actogram: no visible global function definition for ‘par’ > > > Actogram: no visible global function definition for ‘barplot’ > > > Actogram: no visible global function definition for ‘box’ > > > Actogram: no visible global function definition for ‘text’ > > > Actogram: no visible global function definition for ‘mtext’ > > > Actogram: no visible binding for global variable ‘end’ > > > AutoCorr: no visible global function definition for ‘par’ > > > AutoCorr: no visible global function definition for ‘layout’ > > > AutoCorr: no visible global function definition for ‘acf’ > > > AutoCorr: no visible global function definition for ‘abline’ > > > AutoCorr: no visible global function definition for ‘title’ > > > AutoCorr: no visible global function definition for ‘mtext’ > > > AutoCorr: no visible global function definition for ‘var’ > > > AutoCorr: no visible binding for global variable ‘end’ > > > CATCosinor: no visible global function definition for ‘par’ > > > CATCosinor: no visible global function definition for ‘pdf’ > > > CATCosinor: no visible global function definition for ‘jpeg’ > > > CATCosinor: no visible global function definition for ‘png’ > > > CATCosinor: no visible global function definition for ‘tiff’ > > > ......... A zillion more for every function I have...... > > > periCosinor: no visible global function definition for ‘par’ > > > periCosinor: no visible global function definition for ‘fft’ > > > Undefined global functions or variables: > > > TukeyHSD abline acf aov as.raster axis barplot box boxplot ccf > > > coefficients dev.cur dev.off drop1 end fft gray heat.colors > > > image > > > jpeg layout legend lines median model.tables mtext na.action > > > na.omit > > > palette par pdf pf plot plot.new png points rainbow rasterImage > > > read.table str strwidth tail terrain.colors text tiff title ts > > > var > > > write.table > > > Consider adding > > > importFrom("grDevices", "as.raster", "dev.cur", "dev.off", > > > "gray", > > > "heat.colors", "jpeg", "palette", "pdf", "png", > > > "rainbow", > > > "terrain.colors", "tiff") > > > importFrom("graphics", "abline", "axis", "barplot", "box", > > > "boxplot", > > > "image", "layout", "legend", "lines", "mtext", > > > "par", > > > "plot", "plot.new", "points", "rasterImage", > > > "strwidth", > > > "text", "title") > > > importFrom("stats", "TukeyHSD", "acf", "aov", "ccf", > > > "coefficients", > > > "drop1", "end", "fft", "median", "model.tables", > > > "na.action", "na.omit", "pf", "ts", "var") > > > importFrom("utils", "read.table", "str", "tail", "write.table") > > > to your NAMESPACE file. > > > > > > > > > Cathy Lee Gierke > > > > > > “Darkness cannot drive out darkness: only light can do that. Hate > > > cannot drive out hate: only love can do that.” > > > > > > “The arc of the moral universe is long, but it bends towards > > > justice.” > > > “Nothing in the world is more dangerous than sincere ignorance > > > and conscientious stupidity.” > > > “Never forget that everything Hitler did in Germany was legal.” > > > > > > “Forgiveness is not an occasional act, it is a constant > > > attitude.” > > > “Injustice anywhere is a threat to justice everywhere.” > > > > > > ― Martin Luther King Jr. > > > > > > > > > On Mon, Jan 30, 2017 at 10:05 AM, Brian G. Peterson <brian@braver > > > ock.com> wrote: > > > > On Mon, 2017-01-30 at 09:45 -0600, Cathy Lee Gierke wrote: > > > > > building ‘CATkit_2.06.tar.gz’ > > > > > > > > R CMD build creates a tarball > > > > > > > > > x-134-84-0-217:CATkit user$ *R CMD check CATkit* > > > > > > > > but you are checknig the directory, not the tarball. > > > > > > > > do > > > > > > > > R CMD check CATkit_2.06.tar.gz > > > > > > > > instead. > > > > > > > > Regards, > > > > > > > > Brian > > > > ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
